Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq5 149 8e-31 seq3 95.1 2e-14 >seq5 Length=897882 Score = 149 bits (164), Expect = 8e-31 Identities = 401/603 (67%), Gaps = 23/603 (4%) Strand=Plus/Plus Query 171608 TTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAG 171667 || |||||||||| ||| ||||| || ||| || ||||| ||||||||| || Sbjct 895081 TTGAAGAACTTTTGTGGTTTATTTCGGGAAGCACTAATGCAAAAGAATTAAATGCCCGAG 895140 Query 171668 GTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTG 171727 ||||||| ||||| ||| ||||| | | | ||| | ||| || ||||||| Sbjct 895141 GTGTTAAGATTTGGGATGCAAATGGAAGTAGACAGTTTCTTGATAGTCTAGGATTTACTG 895200 Query 171728 AAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTC 171787 ||||| |||||||||||| || || ||||||| || |||||||||||| || ||| Sbjct 895201 AAAGACCAGAAGGTGATTTGGGACCTGTTTATGGGTTCCAATGGAGACATTTTGGTGCTA 895260 Query 171788 AATAT-ATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAA-- 171844 ||||| | || | | || | || ||||||||| ||||||| || ||| || |||| Sbjct 895261 AATATGAGGGAGT-TGATGCTGACTACACAGGAAAAGGAGTTGATCAACTA--GCAAATG 895317 Query 171845 CTATTAATACTTTACAAAACAACC---CAGAAAGTAGAAGGATGTTAATTGATAGTTGGA 171901 |||| | || | ||||||| | ||| |||| || ||| || ||||| Sbjct 895318 TTATTGACCAAATAAAGAACAACCCTTCTTCAAGAAGAATTATCTTATCTG---CTTGGA 895374 Query 171902 ATGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATG 171961 || | || | |||| | |||||||| | ||||| || || || ||| |||||||||| Sbjct 895375 ATCCATCTGATCTTGGTGAAATGGTTTTGCCTCCATGTCATACACTAGTTCAATTTTATG 895434 Query 171962 TCAGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGC--TGATTTAGGATT 172019 | || | ||| |||||| || |||||| | |||| |||| | || || Sbjct 895435 T---TCAAGATGGGGAGTTAAGTTGTCACTTGTATCAACG--CAGCGGTGATGTTGGTTT 895489 Query 172020 GGGGGTACCTTATAATATTGGATTTTATTCATTTTTAATACTTGTG--TTAAGTAAATGG 172077 ||| || || | ||| |||| | || ||| |||| | | | || | | || | | Sbjct 895490 GGGAGTTCCATTTAACATTGCTTCGTACTCACTTTTGACTCATATGATTGCAAAAATTTG 895549 Query 172078 TGCAATTTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAAT 172137 || || |||| | || | ||| |||| ||| |||| |||| ||| | ||| ||| Sbjct 895550 TGGAA--TAACAACTGGTGATTTTGTTCACACTATTGGCGATGCTCATATTTATAAAAAC 895607 Query 172138 CATGTTGAACCTTTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAA 172197 ||| ||| || | || ||||| | || |||| || | ||||||| ||| | Sbjct 895608 CATACTGATGCTCTGAAACAACAATTGACTCGAGAACCCTACCCATTTCCAACAATTAGA 895667 Query 172198 TTT 172200 ||| Sbjct 895668 TTT 895670 >seq3 Length=1139157 Score = 95.1 bits (104), Expect = 2e-14 Identities = 169/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 193356 GGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGT 193415 || |||| |||||| || ||||| ||||||||| ||||||||||||||||||| Sbjct 413469 GGACCAATTTATTATCAAAAACTTAAGCACATGGTTTTGGATAAAATGCATGCTAGAGCA 413528 Query 193416 CATGGGCAAGTGACTACTTT-ACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGG 193474 |||| || || ||| ||| || ||||| | | ||| | ||| | ||| || Sbjct 413529 AGAGGGCCTGTTGCTGTTTTGACA-CGTCAACCTACTGAAGGTAGAGCTCGTGATGGTGG 413587 Query 193475 TTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAAT--TC 193532 ||||||||| ||||||||||||| ||| || || ||| |||| || || || | Sbjct 413588 TTTAAGATTAGGAGAAATGGAAAGAGATTGCCTTATAGCATATGGAGC--ATCGATGCTT 413645 Query 193533 TTAAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGT 193592 |||| ||| || | | | | ||| |||| |||||||| || ||||| | | |||| Sbjct 413646 TTAATGGAACGATTAATGGTTTCTTCAGATCAATTTCAAGTTGACGTTTGTTCCGTATGT 413705 Query 193593 GG 193594 || Sbjct 413706 GG 413707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628494250222080