Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq3059 105 7e-18 seq4 100 3e-16 seq4548 89.7 5e-13 >seq3059 Length=2231 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||| ||||||| || || || ||||| ||||||||||| Sbjct 1428 CCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAG 1369 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| |||||||| |||||| | || | | ||| ||||| || || Sbjct 1368 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGG 1309 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || || || ||| || ||| | | || | ||||| | ||||||||| Sbjct 1308 ATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACT 1249 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | || || || ||||| ||||| ||||| || |||||| || Sbjct 1248 TCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCATACCT 1198 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | || ||||||| || || || ||||| ||||||||||| Sbjct 288 CCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAG 229 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| |||||||| |||||| | || | | ||| || || || || Sbjct 228 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 169 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| || ||| | | || | ||||| | |||||||| Sbjct 168 ATTCCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACC 109 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | ||||| || || || || || ||||| || |||||| || Sbjct 108 TCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCATACCT 58 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||| ||||||| || || || ||||| ||||||||||| Sbjct 1656 CCTCCACGAAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAG 1597 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || || ||||| |||||| | |||| | ||| || || || || Sbjct 1596 AGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG 1537 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || || || ||| || ||| | | || | ||||| | ||||||||| Sbjct 1536 ATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACT 1477 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | || || || ||||| ||||| ||||| || |||||| || Sbjct 1476 TCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCATACCT 1426 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | || ||||||| || || ||||| || |||||||| || Sbjct 516 CCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAG 457 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| ||||| || |||||| |||| | | ||| ||||| || || Sbjct 456 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGG 397 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || || || ||| || ||| | | || | ||||| | |||||||| Sbjct 396 ATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGGTTCTACC 337 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | ||| | || || || ||||| || || || |||||||||||| || Sbjct 336 TCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTGACAAATATTTGCATACCT 286 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||||||||||| || || || ||||| |||||||| || Sbjct 972 CCTCCACGGAGACGGAGAACTAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAA 913 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || || ||||| |||||| |||| | | ||| || || || || Sbjct 912 AGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGGA 853 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || ||| || | | || | ||||| | |||||||| Sbjct 852 ATACCTTCTTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACC 793 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | ||| | || || || ||||| || || || || || |||||| || Sbjct 792 TCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCATACCT 742 >seq4 Length=926804 Score = 100 bits (110), Expect = 3e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||| ||||||| || || || ||||| ||||||||||| Sbjct 390728 CCTCCACGAAGACGAAGAACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAG 390669 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| |||||||| |||||| | || | | ||| ||||| || || Sbjct 390668 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGG 390609 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || ||| || ||| | | || | || || | || ||||| Sbjct 390608 ATTCCTTCTTTATCTTGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACC 390549 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTT 137422 |||| ||| | || ||||| ||||| || || || || |||||||| | | | |||| Sbjct 390548 TCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCATGGTTAAAGTTT 390491 >seq4548 Length=666 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||| || || | || ||||| ||||| |||||||| || Sbjct 227 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCAGAA 168 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || ||||||||||| ||||| | |||| | ||| || || || || Sbjct 167 AGAGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGA 108 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| ||| || | | || | || || | ||||| ||| Sbjct 107 ATTCCTTCTTTGTCTTGAATCTTTGACTTGACGTTATCAATGGTATCAGAAGGTTCCACT 48 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| || || || ||||| || || || ||||| Sbjct 47 TCAAGAGTGATGGTCTTTCCAGTTAAAGTTTTAACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488515279719600