Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 237 4e-57 seq21 122 2e-22 seq5 118 3e-21 seq389 111 4e-19 >seq1 Length=1686976 Score = 237 bits (262), Expect = 4e-57 Identities = 550/811 (68%), Gaps = 25/811 (3%) Strand=Plus/Minus Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||||| | |||||||| ||| || | |||||||| |||||||||||||| | |||||| Sbjct 916381 TTGAAAGACCTCAACATATGCTTATGCGTGTTGCCATTGGTATTCATGGTGAAGATATTG 916322 Query 110422 AAGCTGTTATTGAATGTTAT-GATGTATTAAGTAAAAAGAAAGCT--ATTCATGCTACTC 110478 | ||| |||| | || ||| ||| || |||| | | || |||| ||| Sbjct 916321 CATCTGCTATTCAGACATACAGATATAT---GTCAAAACGACTTTTTATCCATGGATCTC 916265 Query 110479 CTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAA 110538 | || ||||||| || || || || || | ||| |||||| | || | Sbjct 916264 CAACGTTATTTAATGCTGGTACCCTACGACCTCAGCTTTGTTCCTGCTTTTTGTTAACGA 916205 Query 110539 TTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCT 110597 | | ||||||||||||||||| || ||||| || |||||| | |||| ||||||| Sbjct 916204 TGAGTGATGATTCTATTGAAGGAATCTATGACACT-TTAAAGCGATGTGCTGTTATTTCA 916146 Query 110598 AAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCT-CAAAAGGAGCAAATAT 110656 || | |||| || | || ||| | ||| | | || | | | |||| || ||| Sbjct 916145 AAGACGGCTGGGGGGGTAGG-ATTAAGTATCAGTACAATCCGTGCCACAGGATCATTTAT 916087 Query 110657 CGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACAC 110716 | | | || || |||||| ||| | |||||||||||| | || | ||| || Sbjct 916086 TTCTGGAACTAATGGATCTTCAAATGGTTTGGTTCCAATGTTACGTGTTTACAATAGTAC 916027 Query 110717 TGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGA 110773 || ||||| |||||||||| ||| ||| ||| |||||||||| ||| | || Sbjct 916026 TGTTCGTTATGTTGATCAAGGTGGCAATAAAAGACCTGGTGCATTTGCTATATATTTGGA 915967 Query 110774 ACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCA-AGGATTTGAAG 110832 ||| |||||| ||||||| | |||| | || || ||| | || |||| |||| Sbjct 915966 ACCATGGCATGCAGATATTATCCAATTTCTTGAG-TTAAAAAAGAACACAGGACCAGAAG 915908 Query 110833 AACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTG 110892 || |||||||||| ||||||||||| | | | ||| || |||||||||| |||||||||| Sbjct 915907 AAGAAAGAGCACGCGATTTATTTTACGGACTTTGGGTTCCAGATTTATTTATGAAACGTG 915848 Query 110893 TT-CAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGAT 110951 || ||| | | ||| ||||| | ||||||||| || | ||| ||||| |||| Sbjct 915847 TTGAAAGCGATTCACAT-TGGTCGTTAATGTGTCCTAATGAATGTCCGGGTCTTGATGAT 915789 Query 110952 GTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAA--GTT-T 111008 | ||| | || ||||| | ||||||| | |||||||||| ||| || ||| | Sbjct 915788 TGTTTTGGTGATGATTTTGATAAACTTTACGTACAATATGAAAATGAA---AATCGTTAT 915732 Query 111009 CGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACT 111068 | |||||| | ||| | | ||||| || || |||||| || | || || Sbjct 915731 AGGAAACAAGTAAAAGCCAGATATATTTGGCAGAAGATTTGTGAATCTCAGATAGAGACG 915672 Query 111069 GGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTA 111128 || | ||| ||||| | || || |||||| ||| || ||| ||||||| |||||| Sbjct 915671 GGTATTCCATATATGCTTTACAAGGATCATTGTAACCGTAAAAGTAATCAACAAAATTTA 915612 Query 111129 GGAACAATTAAGTCTAGTAA--TTTGTGCTG 111157 |||||||| || | | || ||||||||| Sbjct 915611 GGAACAATAAAATGTTCAAATCTTTGTGCTG 915581 >seq21 Length=323752 Score = 122 bits (134), Expect = 2e-22 Identities = 393/604 (65%), Gaps = 12/604 (2%) Strand=Plus/Minus Query 131698 TATTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAA 131757 ||||||||| |||||||| || | | ||||| | || || | ||||| | Sbjct 30857 TATTCATAGTGAGATGTACTCGAAACTTATTGAAACCTACATTCGTGATCAGGATGAGAG 30798 Query 131758 AAATAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGC 131817 ||||||| | || | ||| | || |||||||| || | ||||||||| || ||||| Sbjct 30797 AAATAAACTCTTCAACGCTTTGGATGAATTTCCTTTCATCAGAAAGAAAGCTGATTGGGC 30738 Query 131818 TATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTA---GCTTTTGC 131874 | | | ||||||| || | ||||| |||| | || |||| |||||||| Sbjct 30737 TCTAAGATGGATTGCCGACAAAAACGCTACTTTTGG---AGAACGTGTAATTGCTTTTGC 30681 Query 131875 TTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCG 131934 ||||||||| |||||||| || ||| | || ||| || || ||||||||||| || Sbjct 30680 AGCTGTTGAAGGAATATTCTTCTCTGGTTCATTTGCTGCCATATTCTGGCTTAAGAAACG 30621 Query 131935 TGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCA 131994 ||| |||||||| || | || || ||| | || || || ||||||| | || || Sbjct 30620 TGGCTTGATGCCCGGGTTAACACATTCGAATGAGTTGATTTCCCGAGATGAGGGGTTACA 30561 Query 131995 TACTGAATTTGCTATAT-TAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATA 132053 ||| ||||| || | | || || || | || | | || | |||| | || Sbjct 30560 CCGTGATTTTGC-ATGTCTTATGTACAGTTACTTGGAGAACAAGCCATCTGAAGAACGTA 30502 Query 132054 TTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGC 132113 | || || | || || || || ||| ||| || ||||| | | |||| || ||| | | Sbjct 30501 TAAAGGAAATAATTAGAGATGCCGTTAGTATTGAAAAGGAATATCTTACTGATGCTCTTC 30442 Query 132114 CTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGAATTCGTTGCTG 132173 || || |||| || |||||| | | | ||| || || || || | ||||| | Sbjct 30441 CTGTTGATATGATCGGAATGAATTCAGGTTTAATGTGTGATTATATCGAGTATGTTGCCG 30382 Query 132174 ATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAACCCCTATACAT 132233 ||| | || | ||||| | | ||| ||||||| || | ||||| | | | Sbjct 30381 ATCATCTATTGGTAGAACTTAATTGTCAAAAGCTTTATAATACTAAGAACCCATTTGATT 30322 Query 132234 GGATGGAGTCAATTTCGC--TTGAAGGTAAAACGAACTTCTTCGAAAGTCGTGTATCTGA 132291 ||| || ||| || | ||||||| ||||| || ||||| || | |||||||| Sbjct 30321 TTATG--GTTAATCTCTCAATTGAAGGCAAAACCAATTTCTTTGAGAAGAAAGTATCTGA 30264 Query 132292 GTAC 132295 ||| Sbjct 30263 ATAC 30260 >seq5 Length=897882 Score = 118 bits (130), Expect = 3e-21 Identities = 329/498 (66%), Gaps = 14/498 (3%) Strand=Plus/Minus Query 58737 ATTGTTCGTTTACAGCATCAATATGATTATGGTAAACGTGAGCATCTCCAATAATATGAT 58796 |||||| || | ||||||| |||| || | |||| |||||||| |||||| | ||| Sbjct 895632 ATTGTTGTTTCAGAGCATCAGTATGGTTTTTATAAATATGAGCATCGCCAATAGTGTGAA 895573 Query 58797 GAACCAATC--CAGGtttttttCCTGTC-TTTTTACACATTATATGAAGCAATACGGAGT 58853 || |||| ||| | || |||| ||||| || || |||||| ||| | |||| Sbjct 895572 CAA--AATCACCAGTTGTTATTCCACAAATTTTTGCA-ATCATATGAGTCAAAAGTGAGT 895516 Query 58854 ATGAAACCATATTAAAAGGGATTCCAAGAAACATATCACCACTACGTTGATAAAATTGTA 58913 | ||| | || ||||| || | ||| | | | |||||| || |||||||| || || Sbjct 895515 ACGAAGCAATGTTAAATGGAACTCCCAAACCAACATCACCGCTGCGTTGATACAAGTGAC 895456 Query 58914 GA-TTAAGAGTGTCATCTGCTTCTACATAAAATTGACATAAAATATGACAAGGAGGAAGT 58972 | |||| || | ||| |||||||||||| || ||||||| ||||| | Sbjct 895455 AACTTAAC----TCCCCATCTTGAACATAAAATTGAACTAGTGTATGACATGGAGGCAAA 895400 Query 58973 GCCATTTTATCAATATCACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGG 59032 |||||| | ||| |||| | |||||| ||| || ||||| | | ||| |||| Sbjct 895399 ACCATTTCACCAAGATCAGATGGATTCCAAGCAGATAAGATAATTCTTCTTGAAGAAGGG 895340 Query 59033 TCATTTTTAATAAGTTCTTCACAATGTTTTATTTGGTCAAATCCATT---AGTATATTCA 59089 | || || || | || | || | || ||| |||| ||| || || || ||| Sbjct 895339 TTGTTCTTTATTTGGTCAATAACATTTGCTAGTTGATCAACTCCTTTTCCTGTGTAGTCA 895280 Query 59090 GTATTGGCATCAATGTATTTATCTCCCCAATAACGCCATTGAAAACCATATACAGGTCCA 59149 | || | | |||||| | || ||| | |||||| || ||||| |||||||| Sbjct 895279 GCATCAACTCCCTCATATTTAGCACCAAAATGTCTCCATTGGAACCCATAAACAGGTCCC 895220 Query 59150 AGAGTTCCTTCAGGATATTCATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTA 59209 | | ||||| || |||| | || || || |||||||| | ||| || ||| Sbjct 895219 AAATCACCTTCTGGTCTTTCAGTAAATCCTAGACTATCAAGAAACTGTCTACTTCCATTT 895160 Query 59210 CCATCCCAAATATGAACA 59227 |||||||||| | |||| Sbjct 895159 GCATCCCAAATCTTAACA 895142 Score = 96.9 bits (106), Expect = 8e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 279067 TATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCTTT 279126 || |||||| | || ||||| | || ||| || ||| || |||||||| |||| Sbjct 512741 TAATCCAAAGTTGGAAGATGCTTTTTATGCAGGAAGTGATAATTCAAAAGAATGTTCTTT 512682 Query 279127 ATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATTGG 279186 ||||||||| || || || |||||| | | | ||||||||||||||||| ||||| Sbjct 512681 ATTTCTTACGGAAGGCGACTCTGCTAAAGCTCTCGTTATTGCTGGTTTATCTGTAATTGG 512622 Query 279187 TCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTG 279239 ||| | ||||| || |||||||||| ||| || | ||||||| |||| Sbjct 512621 GAAAGATTATTATGGTGTTTTTCCTTTAAAAGGAAAGATTATTAATGTCCGTG 512569 >seq389 Length=23259 Score = 111 bits (122), Expect = 4e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||| |||| | ||| ||| | || ||| | |||||||| | |||||||| ||| Sbjct 1179 CATTTAGATGATGACGATGTTGTTTTATTTAATCGTCAACCATCTTTACATAAAATTTCT 1120 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || ||| | |||| || ||||| | | ||| ||| ||||| || |||| | || Sbjct 1119 ATTATGTCACATAGAGCTAAAGTTGTTCCAGGAAGGACGTTTCGTTTTAATGAGTGCGCC 1060 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||||| || |||||||| ||||||||||| |||||||||||| | ||| |||| || Sbjct 1059 TGTACACCATATAATGCCGATTTTGATGGTGATGAAATGAATTTACATTTACCACA 1004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186741285998583