Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4548 118 3e-21 seq3059 113 1e-19 seq4 98.7 2e-15 >seq4548 Length=666 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || ||||| || |||||| | ||||||||| |||||| Sbjct 4 CAGATCTTTGTTAAAACTTTAACTGGAAAGACCATCACTCTTGAAGTGGAACCTTCTGAT 63 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||||||| |||||||||||| || ||| ||| Sbjct 64 ACCATTGATAACGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAACAA 123 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || ||||| ||||| || | || |||||||| ||| | | || |||||| | Sbjct 124 AGATTGATTTTCGCTGGAAAACAACTCGAGGATGGAAGAACTCTTTCTGACTACAACATT 183 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || || ||||| ||| | ||| | | ||||| Sbjct 184 CAAAAGGAATCAACTCTCCACTTGGTTCTCCGTCTTCG 221 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || |||||||| |||||| | || || || ||||||||| | || || ||| | Sbjct 253 ACTGGAAAAACTATCACTCTTGAGGTAGAGCCTTCTGACACCATTGATAACGTTAAGTCA 312 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| ||||| || ||| |||||| | || ||||| ||||| Sbjct 313 AAGATCCAAGACAAAGAGGGAATCCCACCAGACCAACAAAGATTGATTTTCGCTGGAAAA 372 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | || |||||||| ||| | | || |||||| ||||||||||||| || |||||| Sbjct 373 CAACTCGAGGATGGAAGAACTCTTTCTGACTACAACATCCAGAAAGAGTCAACCCTTCAC 432 >seq3059 Length=2231 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || |||||||| || ||| | || || ||| ||||||| Sbjct 521 CAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCTGAC 580 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| ||||| |||||||| ||| || ||| ||| Sbjct 581 ACCATTGACAACGTTAAGTCAAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAACAA 640 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || ||||| ||| | || |||||||| ||| | | || |||||| || Sbjct 641 AGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTTTCTGACTACAACATC 700 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||||||||| || ||||| Sbjct 701 CAGAAAGAGTCAACCCTTCA 720 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||| || | || |||||||| || ||| | || || ||| ||||||| Sbjct 293 CAAATATTTGTCAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCTGAC 352 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || || ||||||||||| || || || || || || ||| Sbjct 353 ACCATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAACAA 412 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| || |||||||| | ||||||||||| ||| | | || |||||| || Sbjct 413 AGATTAATCTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTCTCTGACTACAACATC 472 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||||||||| || ||||| Sbjct 473 CAGAAAGAGTCAACCCTTCA 492 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || || ||| | || || ||| ||| ||| Sbjct 65 CAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCCGAC 124 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || || ||||||||||| |||||||||||| || ||| ||| Sbjct 125 ACTATTGACAATGTCAAATCCAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAACAA 184 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || ||||| || | ||||||||||| ||| | | ||||||||| || Sbjct 185 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAACATC 244 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || ||||| || ||||| Sbjct 245 CAAAAGGAGTCAACCCTTCA 264 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || |||||||| || ||| | ||||| ||| ||| ||| Sbjct 1433 CAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCCGAC 1492 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || || ||||||||||| || || || || || ||| ||| Sbjct 1493 ACTATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGACCAACAA 1552 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || ||||| ||| | || |||||||| ||| | | ||||||||| || Sbjct 1553 AGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACAACATC 1612 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| |||||||| | ||| | | ||||| Sbjct 1613 CAAAAGGAGTCAACTCTTCATTTGGTTCTTCGTCTTCG 1650 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || |||||||| || ||| | ||||| ||| ||| ||| Sbjct 1205 CAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCCGAC 1264 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || || ||||||||||| || || || || || || ||| Sbjct 1265 ACTATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAACAA 1324 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || ||||| || | ||||||||||| ||| | | ||||||||| || Sbjct 1325 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAACATC 1384 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || ||||| |||||||| Sbjct 1385 CAAAAGGAGTCAACTCTTCA 1404 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || || ||| | || || ||| ||||||| Sbjct 977 CAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCTGAC 1036 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || |||||||| || ||||| || || ||| ||| Sbjct 1037 ACCATCGATAATGTCAAGTCGAAAATTCAAGACAAGGAAGGGATCCCACCAGACCAACAA 1096 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || ||||| || | ||||||||||| ||| | ||||||| || | Sbjct 1097 AGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCCGATTATAATATT 1156 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || ||||| |||||||| Sbjct 1157 CAAAAGGAGTCAACTCTTCA 1176 >seq4 Length=926804 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||| ||||| |||||| | || || || |||||| ||| | || || || Sbjct 390526 ACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTGATACAATTGACAATGTCAAATCT 390585 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| ||||||||||| || || |||||| | || || || ||||| Sbjct 390586 AAGATTCAAGATAAAGAAGGAATCCCACCAGATCAACAAAGATTAATTTTTGCTGGAAAA 390645 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | ||||||||||| ||| | | ||||||||| |||| || ||||| || ||||| Sbjct 390646 CAACTTGAAGATGGAAGAACTCTCTCTGATTACAACATCCAAAAGGAGTCAACCCTTCAT 390705 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| | | ||||| Sbjct 390706 TTGGTTCTTCGTCTTCG 390722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181749586802463