Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11-
13] 4,703 sequences; 60,447,969 total letters
Query= NC_025422.1
Length=155997
Score E
Sequences producing significant alignments: (Bits) Value
seq5 143 3e-29
>seq5
Length=897882
Score = 143 bits (158), Expect = 3e-29
Identities = 305/451 (68%), Gaps = 12/451 (3%)
Strand=Plus/Minus
Query 23046 GGATGAGATTGGTAATTGATAAGCTCAA-AGTCTTCGAAAGTAAAGTCATCAATAGTCTT 23104
|||||||||| ||||| ||| || | ||| |||| ||||| |||||||| || ||
Sbjct 895744 GGATGAGATTCATAATTCTCAAGAATAATATTCTCCGAA-GTAAAATCATCAATTGTATT 895686
Query 23105 TTGATTA---CCATTGATTTTAATTTTCGGGAAAGGATATAAAGGGGTTCTTGAA--AGT 23159
| |||| ||| | | ||||| | || || || || ||||||| || | |
Sbjct 895685 TAAATTATCTCCAACAAATCTAATTGTTGGAAATGGGTA-----GGGTTCTCGAGTCAAT 895631
Query 23160 TGTTCTTTTGCTCCATCGACATGATTTACATACAAATGAGCATCAACAATTGTATGGACA 23219
|||| ||| |||| ||| ||| ||| | ||||||||| |||| || || |||
Sbjct 895630 TGTTGTTTCAGAGCATCAGTATGGTTTTTATAAATATGAGCATCGCCAATAGTGTGAACA 895571
Query 23220 AATTCACCAGCTTTTAGTCCAGTAATCTTTGCAACCATATGAGTCAAAAGAGAATAGAAA 23279
|| ||||||| | ||| |||| ||| ||||||| ||||||||||||||| || || ||
Sbjct 895570 AAATCACCAGTTGTTATTCCACAAATTTTTGCAATCATATGAGTCAAAAGTGAGTACGAA 895511
Query 23280 GCAATATTGTATGGAATTCCGAGGGCAGTATCTCCAGAACGCTGCAAAAGATGGCAGTTG 23339
||||| || |||||| ||| | || ||| || || || | | || || |
Sbjct 895510 GCAATGTTAAATGGAACTCCCAAACCAACATCACCGCTGCGTTGATACAAGTGACAACTT 895451
Query 23340 AGCTTACCTTTAGTCACTCCAAATTGAAATGTCATATGACAAGGAGGTAGCGCCATTTGA 23399
| || || | || |||||||| | ||||||| ||||| | |||||| |
Sbjct 895450 AACTCCCCATCTTGAACATAAAATTGAACTAGTGTATGACATGGAGGCAAAACCATTTCA 895391
Query 23400 TCAATTTCACCAGGATTCCAAGCAGTCACAATATGTCTACGCGAATATGGATTGGTCTTG 23459
||| ||| ||||||||||||| | ||| ||| | ||| | || ||| ||||
Sbjct 895390 CCAAGATCAGATGGATTCCAAGCAGATAAGATAATTCTTCTTGAAGAAGGGTTGTTCTTT 895331
Query 23460 ATATCTTCAATTACTTTCGCGAGTTGATCAA 23490
|| | ||||| || || || ||||||||||
Sbjct 895330 ATTTGGTCAATAACATTTGCTAGTTGATCAA 895300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499033061369160
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |