Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3059 95.1 1e-14 seq4 87.8 2e-12 >seq3059 Length=2231 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | ||||||| ||||| |||||||| || | || | |||||| Sbjct 1411 AACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTC 1352 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || ||||| || | | | |||| | ||||||||||| || || || || ||||| Sbjct 1351 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCTTG 1292 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || ||| | | || | ||| |||| || || ||||| | || | ||||| Sbjct 1291 AATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTT 1232 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| |||||| | |||||||||||| Sbjct 1231 TCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | ||||||| ||||| |||||||| || | || | ||| || Sbjct 1639 AACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTC 1580 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||| || | | | || | | ||||| ||||| || || || || ||||| Sbjct 1579 AAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCCTCCTTATCTTG 1520 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || ||| | | || | ||| |||| || || ||||| | || | ||||| Sbjct 1519 AATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTT 1460 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| |||||| | |||||||||||| Sbjct 1459 TCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 >seq4 Length=926804 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | ||||||| ||||| |||||||| || | || | |||||| Sbjct 390711 AACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTC 390652 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || ||||| || | | | |||| | ||||||||||| || || ||||||||||| Sbjct 390651 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTTTATCTTG 390592 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || ||| | | || | ||||| | ||||| || || | || | ||||| Sbjct 390591 AATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 390532 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || |||| ||| || | ||||| |||||| Sbjct 390531 GCCTGTCAAAGTCTTAACAAAAATTTGCATG 390501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476583181219080