Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq4548 95.1 1e-14 seq1 82.4 7e-11 >seq4548 Length=666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| ||||| ||||| | ||||| | ||||| ||| | Sbjct 1 ATGCAGATCTTTGTTAAAACTTTAACTGGAAAGACCATCACTCTTGAAGTGGAACCTTCT 60 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||| ||| || ||||| || || || || || || Sbjct 61 GATACCATTGATAACGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAA 120 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| || || ||||||||||| |||| |||| | | || ||||| Sbjct 121 CAAAGATTGATTTTCGCTGGAAAACAACTCGAGGATGGAAGAACTCTTTCTGACTACAAC 180 Query 25355 ATTCAAAAAGAATCCAC 25371 |||||||| ||||| || Sbjct 181 ATTCAAAAGGAATCAAC 197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || |||||| | ||||| | || || || ||| | Sbjct 229 ATGCAAATCTTTGTTAAGACCTTGACTGGAAAAACTATCACTCTTGAGGTAGA-GCCTTC 287 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || ||| || || |||||||| || || || || || Sbjct 288 TGACACCATTGATAACGTTAAGTCAAAGATCCAAGACAAAGAGGGAATCCCACCAGACCA 347 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | |||| || || ||||||||||| |||| |||| | | || ||||| Sbjct 348 ACAAAGATTGATTTTCGCTGGAAAACAACTCGAGGATGGAAGAACTCTTTCTGACTACAA 407 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || ||||| || ||| |||| || || Sbjct 408 CATCCAGAAAGAGTCAACCCTTCACTTGGT 437 >seq1 Length=1686976 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/149 (72%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 138323 ATCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACACGCA 138382 |||| |||| || || ||| | ||||| ||||||||||| || || ||||||| Sbjct 916298 ATCTGTATGTCTGAATAGCAGATGCAATATCTTCACCATGAATACCAATGGCAACACGCA 916357 Query 138383 TCAGCATGTGTTGAGGTCTCTCGACGATAACATTATTGACTCTCAATAAATATTTTCCTT 138442 | ||||| ||||||||||| || || || |||||| | | ||||||||||| || || Sbjct 916358 TAAGCATATGTTGAGGTCTTTCAACAATTTTATTATTTATTTTCAATAAATATGATCGTT 916417 Query 138443 CGATCAAGGTCTTCAGACCGAAGTAAGTA 138471 | || ||||| | || ||||| ||| Sbjct 916418 C---TAATGTCTTAAATCCAAAGTATGTA 916443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445068234012960