Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4548 125 7e-24 seq3059 122 9e-23 seq4 113 5e-20 seq38 86.0 6e-12 seq5 86.0 6e-12 >seq4548 Length=666 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | || | ||| || || ||||||||||||||||||||||| | Sbjct 227 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCAGAA 168 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||||| ||||| || || |||||||| | || || || || || Sbjct 167 AGAGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGA 108 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||| ||| ||||| || | || || || | |||||| Sbjct 107 ATTCCTTCTTTGTCTTGAATCTTTGACTTGACGTTATCAATGGTATCAGAAGGTTCCACT 48 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || || |||||||||||||| || || ||||| Sbjct 47 TCAAGAGTGATGGTCTTTCCAGTTAAAGTTTTAACAAAGATCTGCAT 1 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || || |||||||| |||||||| || | | | | | | || || ||||| Sbjct 659 TGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCA-TCCTCAAGCTG 601 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||||||||| | || || || || || || |||||||| ||||| || || Sbjct 600 TTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTT 541 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | || || ||| | ||||| || | ||| || ||||||||||| ||||| || || Sbjct 540 TGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAGT 481 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || || ||||| Sbjct 480 CAAGGTCTTAACAAAGATCTGCAT 457 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || | ||| || || || || || || ||||||||||| | Sbjct 455 CCTCCACGGAGACGGAGGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAA 396 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||||| ||||| || || |||||||| | || || || || || Sbjct 395 AGAGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGG 336 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||| || ||| || || || | ||||| || | || || Sbjct 335 ATTCCCTCTTTGTCTTGGATCTTTGACTTAACGTTATCAATGGTGTCAGAAGGCTCTACC 276 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||| || || || || ||||| || |||||||| Sbjct 275 TCAAGAGTGATAGTTTTTCCAGTCAAGGTCTTAACAAAGATTTGCAT 229 >seq3059 Length=2231 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || || |||||||| |||||||| || | | | | | | || || ||||| Sbjct 1632 TGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCA-TCCTCAAGCTG 1574 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||||||||| | || || || || || || || || || |||||||| || Sbjct 1573 TTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCCTCCTTATCTTGAATCTT 1514 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 |||||| ||| | |||||||| | ||| || || |||||||||||||| || || Sbjct 1513 GGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTTCCAGT 1454 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| |||||||| ||||| Sbjct 1453 CAAAGTTTTGACGAAAATCTGCAT 1430 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | ||| || | || | || || || || |||||||| |||||||| || | Sbjct 1428 CCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAG 1369 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | | | || || || ||||| || |||||||| || | || ||||| || || Sbjct 1368 AGAGTTCTTCCA-TCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGG 1310 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || |||||||| || |||||| ||| | |||||||| | ||| || Sbjct 1309 GATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTAC 1250 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||||||||| || || |||||||| |||||||| ||||| Sbjct 1249 TTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | ||| || | || | || || || || |||||||| |||||||| || | Sbjct 288 CCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAG 229 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | | | || || || ||||| || |||||||| || | || || || || || Sbjct 228 AGAGTTCTTCCA-TCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGG 170 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| |||||||| || |||||| ||| | |||||||| | ||| || Sbjct 169 AATTCCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTAC 110 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||||||||| || || |||||||| || ||||| || ||||| Sbjct 109 CTCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 62 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || | || || || || |||||||||||||||||||| | Sbjct 972 CCTCCACGGAGACGGAGAACTAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAA 913 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || |||||||| || ||||| || || | || || || || || Sbjct 912 AGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGGA 853 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||| || ||| || || ||| | ||||| || | ||| || Sbjct 852 ATACCTTCTTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACC 793 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||||| ||||| || || || || ||||| || || ||||| Sbjct 792 TCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 746 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || | || || || || ||||||||||| || || ||| | Sbjct 1200 CCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCGGAA 1141 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || ||||| || ||||||||||| | || || || || || Sbjct 1140 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG 1081 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||||||||| ||||| || | ||||| || | ||| || Sbjct 1080 ATCCCTTCCTTGTCTTGAATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCTACC 1021 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||||||||| || || |||||||| || ||||| || ||||| Sbjct 1020 TCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 974 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || | || || || || || || || ||||||||||| | Sbjct 744 CCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAA 685 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || |||||||| || ||||||||||| | || || || || || Sbjct 684 AGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGA 625 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||| || ||| || || ||| | ||||| || | ||| || Sbjct 624 ATACCTTCTTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACC 565 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||||| ||||| || || || || ||||| || || ||||| Sbjct 564 TCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 518 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | ||| || | || | || || || || || || || ||||||||||| | Sbjct 516 CCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAG 457 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | | | || || || || || || ||||| || || | || ||||| || || Sbjct 456 AGAGTTCTTCCA-TCTTCAAGTTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGG 398 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || |||||||| || |||||| ||| | ||||| || | ||| || Sbjct 397 GATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGGTTCTAC 338 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||||| ||||| || || || || || || || |||||||| Sbjct 337 CTCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTGACAAATATTTGCAT 290 >seq4 Length=926804 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || || |||||||| |||||||| || | | | | | | || || || || Sbjct 390704 TGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCA-TCTTCAAGTTG 390646 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || |||||||| || | || ||||| || || || |||||||| |||||||| || Sbjct 390645 TTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTTTATCTTGAATCTT 390586 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 |||||| ||| | ||| || || | || || || ||||| |||||||| || || Sbjct 390585 AGATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGT 390526 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| ||||||||||| Sbjct 390525 CAAAGTCTTAACAAAAATTTGCAT 390502 >seq38 Length=203164 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | ||| || || || || || || |||||||| ||||| ||||| | Sbjct 170979 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCT 170920 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | || || || ||||| || || ||||| || | | Sbjct 170919 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 170860 Query 134694 GTTTTAACGAAAATTTGCATTTTGT 134718 || ||||||||||||||||||| || Sbjct 170859 GTCTTAACGAAAATTTGCATTTCGT 170835 >seq5 Length=897882 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | || ||||| || || || || ||||||||||| || || || Sbjct 723937 CCGGCAAAAATAAGCCGTTGCTGGTCTGGTGGAATACCTTCTTTTTCATGGATCTTAGTC 723878 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || ||||| | || || || ||||| || ||||| || |||||| Sbjct 723877 TTAACATTATCAACAGTATCGGAGGCCTCAACCTCAAGAGTTATTGTTTTTCCAGTTAAA 723818 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| |||||||||||||| Sbjct 723817 GTTTTTACGAAAATTTGCAT 723798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505368688891560