Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq21 181 2e-40 >seq21 Length=323752 Score = 181 bits (200), Expect = 2e-40 Identities = 499/749 (67%), Gaps = 28/749 (4%) Strand=Plus/Plus Query 161173 TGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATA 161232 ||| || ||| | || | ||||| |||||||| ||||| ||| || ||||||||| Sbjct 162300 TGAAATTTACCATCTTGCAGCACAAAGTCATGTTAAAGTTAGTTTTGATTTACCTGAATA 162359 Query 161233 TACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGG 161292 ||||||| || ||||| | || || ||||| | | || || | || | | | Sbjct 162360 TACAGCAGAGGTAGATGCAGTTGGTACATTAAGACTTCTCGATGCTATA-GTAGCTT-GT 162417 Query 161293 TATGAC--AGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTA 161350 || | | | | ||| | | ||||| || || ||| || | ||||| || Sbjct 162418 AATCTCCAACACAAAGTCAGATTTTACCAAGCTTCTACCTCAGAACTTTATGGAAAAGTC 162477 Query 161351 CAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCT 161410 ||||| | || || ||||| |||||||| || || |||||| |||||||| ||||| Sbjct 162478 CAAGAAATCCCCCAAAAAGAGACAACACCATTTTATCCACGAAGTCCATATGCAGTAGCA 162537 Query 161411 AAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGT 161470 ||| | || | |||||||| | || || || | || ||||| || || | Sbjct 162538 AAATTGTACGCTTATTGGATAATTAAAAATTATCGTGAAGCATATGGAATATTTGCTTGC 162597 Query 161471 AGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAG 161530 | ||||||| |||| || ||||| |||||| || | ||| | | || ||||| | || Sbjct 162598 AATGGTATTTTATTTAATCATGAATCACCAAGAAGAGGTAATAACTTTGTAACAAGAAAA 162657 Query 161531 ATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAAT 161590 ||||| |||| || | ||||||| ||| | || || ||| || |||||| Sbjct 162658 ATTACAAGGGCTGTAGCTAAAATTAGTATAGGTGTTCAAGAAACATTATTACTTGGTAAT 162717 Query 161591 CTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATG 161650 | | | | ||| |||||||||||||| |||| ||||| || ||||||||| || Sbjct 162718 TTGGATGCTAAACGTGATTGGGGTCATGCAAAAGAGTATGTTGAAGCTATGTGGAGAATT 162777 Query 161651 TTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGTAAAGAGTATTCA----GT 161706 | ||||| || || ||||||| ||| ||||| ||||||||| | ||| || Sbjct 162778 CTTCAACACGATGAACCAGATGACTTTGTTATTGCTACAGGTAAA----ACTCAAAGTGT 162833 Query 161707 GAAGGACTT-TGTA--GAGGCATCTGCTGAATACTTTGGTATGAAGATTGA-GTGGCAGG 161762 | || || |||| ||| | ||| ||| ||||||| || ||| | ||||| | Sbjct 162834 TAGAGATTTCTGTAATTTGGCTTTTGCCGAA---ATTGGTAT-AAAATTAATATGGCAAG 162889 Query 161763 GTGAAGGATTGGATGAAGTGGGTATAGATAGA-TTTACAAAGAAGGTTGTCGTTCGTGTG 161821 |||||||| | |||| || ||||| || ||| ||| || ||| || ||||| Sbjct 162890 GTGAAGGAGTTAATGAGGTTGGTATTGA-AGAGAGCACAGGAAAAGTTCGTGTACGTGT- 162947 Query 161822 AGTGA--CAAA-TACTTCAGACCAGCAGAGGTTGAAACTCTCTGGGGTGATCCCACTAAG 161878 ||| |||| |||| |||||| | || ||||| |||| || ||||| || || Sbjct 162948 --TGATCCAAATTACTATAGACCAACTGAAGTTGACCTTCTCATTGGAGATCCAACAAAA 163005 Query 161879 GCTAAAGAGGTATTGGGTTGGAAACCTAA 161907 |||||||| ||| | || ||| || |||| Sbjct 163006 GCTAAAGAAGTACTAGGATGGGAAGCTAA 163034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729886689263640