Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq21 205 7e-48 seq41 187 2e-42 >seq21 Length=323752 Score = 205 bits (226), Expect = 7e-48 Identities = 477/710 (67%), Gaps = 12/710 (2%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || || || || |||||||| || || || || || || ||||| ||| | ||| Sbjct 30979 GTGTTAGCCTTCTTTGCTGCATCGGATGGTATCGTTAACGAGAATTTAGTTGAAAGATTT 30920 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | | ||||| || | || || ||||| | ||| ||||| |||||||||||||| ||| Sbjct 30919 TCAAAGGAAGTCCAGGTCCCCGAGGCACGCTTTTTCTATGGTTTTCAAATTGCCATGGAA 30860 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029 ||||||||| || |||||| || || || || ||||| ||| | | ||| Sbjct 30859 AATATTCATAGTGAGATGTACTCGAAACTTATTGAAACCTACATTCGTGATCAGGATGAG 30800 Query 44030 AAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGG 44089 | || | | || || || | || | | ||| || | | | ||||| || ||| Sbjct 30799 AGAAATAAACTCTTCAACGCTTTGGATGAATTTCCTTTCATCAGAAAGAAAGCTGATTGG 30740 Query 44090 GCCCTTAAATGGATAA---ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCA 44146 || || | |||||| | ||| | | ||||||||||||| | | || |||||| Sbjct 30739 GCTCTAAGATGGATTGCCGACAAAAACGCTACTTTTGGAGAACGTGTAATTGCTTTTGCA 30680 Query 44147 GTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGA 44206 | ||| ||||| || ||||| || || || ||||| |||||||| ||| | |||||||| Sbjct 30679 GCTGTTGAAGGAATATTCTTCTCTGGTTCATTTGCTGCCATATTCTGGCTTAAGAAACGT 30620 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 || |||||||| ||||| || ||| |||||||| || || ||||| || ||||| Sbjct 30619 GGCTTGATGCCCGGGTTAACACATTCGAATGAGTTGATTTCCCGAGATGAGGGGTTACAC 30560 Query 44267 TGCGATTTTGCTTG-CTTGT-TACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA 44324 | |||||||| || ||| | ||| | || || ||||| | ||||| || || | | Sbjct 30559 CGTGATTTTGCATGTCTTATGTAC--AGTTA-CTTGGAGA--ACAAGCCATC-TGAAGAA 30506 Query 44325 C-AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCA 44383 | || | || || || ||| || || | || ||| | |||| | | || || Sbjct 30505 CGTATAAAGGAAATAATTAGAGATGCCGTTAGTATTGAAAAGGAATATCTTACTGATGCT 30446 Query 44384 TTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATT 44443 | ||||| || | || ||||||||| | ||| ||| | ||||| || || || Sbjct 30445 CTTCCTGTTGATATGATCGGAATGAATTCAGGTTTAATGTGTGATTATATCGAGTATGTT 30386 Query 44444 GCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTT 44503 || |||| | || | | ||||| ||| | || | |||| | | ||||| ||| Sbjct 30385 GCCGATCATCTATTGGTAGAACTTAATTGTCAAAAGCTTTATAATACTAAGAACCCATTT 30326 Query 44504 GATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAA 44553 |||||||||| ||| | || | ||||||||||| || || ||||| || Sbjct 30325 GATTTTATGGTTAATCTCTCAATTGAAGGCAAAACCAATTTCTTTGAGAA 30276 >seq41 Length=195677 Score = 187 bits (206), Expect = 2e-42 Identities = 486/731 (66%), Gaps = 20/731 (3%) Strand=Plus/Plus Query 19220 ATTGGAATGT-GAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTT 19278 ||||| || | ||||| ||| |||||| || || |||||| || |||| |||||| Sbjct 83367 ATTGGGATTTCGAAAGT-ATGGGAATTGGTGGTTTAGATAAAGAATTCTCTGCAATCTTC 83425 Query 19279 CGTAGAGCATTTGTGTCGCGTGTTTTTTCTG--CAGATGTCATTAAACAATTGGG-ATGT 19335 | ||||| ||| | || | || ||| |||| || ||||||| || ||| Sbjct 83426 AGAAGAGC-TTTCT-TCAGTAGATTATTCCCACCAGAGCATGTTGAACAATTAGGCATG- 83482 Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 ||||| || ||||| | | |||||||| || || || ||| ||||||||||| || Sbjct 83483 AAACACGTCCGTGGTATCCTACTTTATGGACCTCCAGGAACTGGTAAAACATTAATAGCC 83542 Query 19396 AGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 | || | ||||| ||| | | | | |||| |||||| || || || ||| || Sbjct 83543 CGTCAAATAGGTAAAATGTTAAATGCCAGAGAACC---CAAAATCGTTAACGGACCTCAA 83599 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || || |||||||||| ||| || |||| ||| || || || || | ||| ||| Sbjct 83600 ATATTGGATAAATATGTTGGTGAAAGTGAAGCTAATATAAGAAAATTATTCGGTGATGCT 83659 Query 19513 GAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAA 19572 || || ||| ||| | | || ||| || | || ||||| || | |||||| Sbjct 83660 GAGGAGGAATTCAAAAGATGTGGTAACAATTCAGCTCTCCATATTATTATCTTCGATGAA 83719 Query 19573 TTGGACGCAATCTGTAAGCAAAGAGGTTC------TGGTGTAAATGGAGTACATGACACT 19626 | || || || ||||| |||||||| | ||| | ||| || || || || Sbjct 83720 ATCGATGCTATATGTAAACAAAGAGGAACACAGGCTGGATCATCTGGTGTTCACGATACA 83779 Query 19627 GTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTT 19686 || ||||||||| |||| ||||| | || |||||| | ||||| || || ||||||||| Sbjct 83780 GTAGTCAATCAAATCCTAACAAAAATGGATGGTGTTGATCAACTAAACAACATTTTAGTT 83839 Query 19687 ATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTG 19746 ||||| ||||| |||||| || | || || || |||||| |||| ||| | || Sbjct 83840 ATTGGTATGACAAATAGAAGAGATATGATTGATGAAGCATTATTAAGACCTGGTAGAATG 83899 Query 19747 GAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATA 19806 ||| || | || || || ||||| || || ||| ||||| |||| ||| |||| Sbjct 83900 GAAGTACAAATGGAGATATCATTACCTGACGAGAATGGGCGTGTACAAATATTACACATC 83959 Query 19807 CATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATT 19866 |||||| ||| ||| || || | | ||| || || || ||| || || |||| Sbjct 83960 CATACAGCAAAGATGAGAGAATACGATAAATTAGGAGAGGACGTTGATTTAAAATTAATT 84019 Query 19867 GCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCAA 19926 || || ||||| | | || || || | ||||| ||||| | || || ||| Sbjct 84020 GCCAAAAAAACAAAAAATTTTTCTGGTGCTGAGATAGAGGGTTTAGTTCGTGCTGCACAA 84079 Query 19927 TCAATTGCAAT 19937 |||| ||| || Sbjct 84080 TCAAGTGCTAT 84090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397433218691515