Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 118 9e-22 >seq1 Length=1686976 Score = 118 bits (130), Expect = 9e-22 Identities = 325/495 (66%), Gaps = 5/495 (1%) Strand=Plus/Plus Query 131372 TGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTT 131431 ||||||||||| || || | ||| | ||||| || || |||||||||||||| ||| Sbjct 915571 TGAACAATTTCAGCACAAAGATTTGAACATTTTATTGTTCCTAAATTTTGTTGATTACTT 915630 Query 131432 TTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCA 131491 ||| || ||| |||||||| | ||| || || | ||||| || | |||| |||| Sbjct 915631 TTACGGTTACAATGATCCTTGTAAAGCATATATGGAATACCCGTCTCTATCTGAGATTCA 915690 Query 131492 ATAATGTATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTTTTCG 131551 ||| | | | | | || || | ||| | | || | ||||| Sbjct 915691 CAAATCTTCTGCCAAATATATCTGGCTTTTACTTGTTTCCTATAACGATTTTCATTTTCA 915750 Query 131552 TAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAAATTGGGACATTCG 131611 || | | |||| | | ||||| | | ||||| || || | | |||||||| Sbjct 915751 TATTGTACGTAAAGTTTATCAAAATCATCACCAAAACAATCATCAAGACCCGGACATTCA 915810 Query 131612 CTGGGACACATTAGCGACCACACGCCGTTCTGTT-CAACTCGCTTCATAAACAAATCCGG 131670 | |||||||||| |||||| | | || || |||| || |||||||| ||||| || Sbjct 915811 TTAGGACACATTAACGACCA-ATGTGAATCGCTTTCAACACGTTTCATAAATAAATCTGG 915869 Query 131671 CACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttttt 131730 ||||| | |||| || | ||| | ||| ||| ||||||| || | | ||||| Sbjct 915870 AACCCAAAGTCCGTAAAATAAATCGCGTGCTCTTTCTTCTTCTGGTCCTGTGTTCTTTTT 915929 Query 131731 CAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCC 131790 || | | ||| | | ||| || |||||||| ||||||||||| | || | ||| || Sbjct 915930 TAACTCAAGAAATTGGATAATATCTGCATGCCATGGTTCCAAATATATAGCAAATGCACC 915989 Query 131791 ---TTTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACAT 131847 | | || || ||||||| ||||| |||||| | | ||||| || || ||||| Sbjct 915990 AGGTCTTTTATTGCCACCTTGATCAACATAACGAACAGTACTATTGTAAACACGTAACAT 916049 Query 131848 GGGCTCCAAACCGTT 131862 || ||||||| || Sbjct 916050 TGGAACCAAACCATT 916064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424910043689736