Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq64 158 1e-33 seq21 102 1e-16 >seq64 Length=153875 Score = 158 bits (174), Expect = 1e-33 Identities = 370/549 (67%), Gaps = 17/549 (3%) Strand=Plus/Plus Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 || ||||| ||||| |||||| |||| ||||| ||||| | || ||||||||| | Sbjct 122693 GAAACTGGCACACCTTACATGGTTTATAAAGATCATTGTAATCGGAAAAGTAATCAACAA 122752 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT-TTACAGACAA 105033 ||| | || |||||| |||| ||||||||||| || ||| | |||| || || | Sbjct 122753 AATCTTGGAACTATCAAGTGTTCTAATCTCTGTACCGAGATCGTTGAATATTGTTCACCA 122812 Query 105034 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA 105093 ||||| ||||| ||||| || | || || |||||| | | ||| ||| ||| Sbjct 122813 -GATGAAGTTGCTGTATGTAATCTAGGGTCTATTGCTCTCAATAGATTTGTTGATATAGA 122871 Query 105094 GACAAAGACATTTGATT---ATGAAA---AACTCCACGAAGTTACGAAAACTGTCACCAA 105147 | || | || || || | |||||||| | ||| | |||| | | |||| Sbjct 122872 AAATGGGAAACCTGTTTTCAATTTTACTCAACTCCACTATGTTGCTAAAATTTTGACCAG 122931 Query 105148 AAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTA 105206 || |||| | |||| ||| |||| |||||| ||| ||| ||| | || |||| Sbjct 122932 GAATTTAAATAAGATTATCGATGTGAATTATTACCCAGTTCCAGAA-GCTAGGAATTCTA 122990 Query 105207 ATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTT 105266 ||||||||||||||||||| ||| | |||||||| ||| | || |||| |||||| || Sbjct 122991 ATATGAGACACCGTCCAATAGGTATTGGTGTTCAAGGTTTGGCAGATGCATTCATGCTCA 123050 Query 105267 GTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCA 105326 | | ||||| || |||| || ||| | ||| | || || || || | Sbjct 123051 TGAGATATCCATTTACCTCACCTCAAGCTAAAGAACTTAATAAACAGATTTTCGAAACAA 123110 Query 105327 TGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATG 105383 | || || | || | ||||| |||| || ||||| || |||||| || |||| Sbjct 123111 TTTACCATGGTGCCTTGGAGGC---TTCATGTGAATTGGCTGAACGTGATGGACCTTATG 123167 Query 105384 AAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTG 105443 |||| | ||| || || |||| || | || | ||||||| ||||||| |||| || Sbjct 123168 AAACTTATGAAGGATCGCCAGTATCTAAGGGAATTCTTCAATACGATATGT-GGAATGTC 123226 Query 105444 AGACCAAGC 105452 || |||||| Sbjct 123227 AGGCCAAGC 123235 >seq21 Length=323752 Score = 102 bits (112), Expect = 1e-16 Identities = 261/391 (67%), Gaps = 10/391 (3%) Strand=Plus/Plus Query 7238 TACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAACGAGGAG 7297 |||||||| || || || || | | ||| ||||||| ||||| || ||||| ||| Sbjct 162442 TACCAAGCTTCTACCTCAGAACTTTATGGAAAAGTCCAAGAAATCCCCCAAAAAGAGACA 162501 Query 7298 ACACCCTTCTACCCACGCTCGGTC--TACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 7355 ||||| || || ||||| ||| || | ||| |||| | || ||||| | Sbjct 162502 ACACCATTTTATCCACGAA--GTCCATATGCAGTAGCAAAATTGTACGCTTATTGGATAA 162559 Query 7356 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 7415 | |||||||| || || | || ||| | ||||| ||| || || | || || |||| Sbjct 162560 TTAAAAATTATCGTGAAGCATATGGAATATTTGCTTGCAATGGTATTTTATTTAATCATG 162619 Query 7416 AATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAGG--GTATCAAACA 7473 ||||||| ||| ||||| ||||||| |||| || ||||| || ||| | | | Sbjct 162620 AATCACCAAGAAGAGGTAATAACTTTGTAACAAGAAAAATTACAAGGGCTGTAGCTA--A 162677 Query 7474 AATCATGAAGGGTGAAAAGGAGTTCATT-GAATTGGGTAACATAAACGCGGCGAGAGATT 7532 ||| | | |||| | || |||| | | ||||| | | || | |||| Sbjct 162678 AATTAGTATAGGTGTTCAAGA-AACATTATTACTTGGTAATTTGGATGCTAAACGTGATT 162736 Query 7533 GGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCG 7592 ||||||| || || || |||||||||||||||||| || |||||||| || ||| | | Sbjct 162737 GGGGTCATGCAAAAGAGTATGTTGAAGCTATGTGGAGAATTCTTCAACACGATGAACCAG 162796 Query 7593 ACGAATATGTAGTAGCAACGGGTGAGACCCA 7623 | || | ||| | || || ||| | || || Sbjct 162797 ATGACTTTGTTATTGCTACAGGTAAAACTCA 162827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583226511555720