Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3059 113 3e-20 seq4548 111 1e-19 seq4 104 1e-17 >seq3059 Length=2231 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| ||||| ||||||||| ||||| ||||| || || |||| Sbjct 1419 AGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTT 1360 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||||||||| || ||||| ||||| | ||||| || || || | |||||| Sbjct 1359 CCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCC 1300 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| || | ||| || | ||| ||||| || ||||| | || Sbjct 1299 TTATCT-TGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGT 1241 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || ||||| || ||||||||||| Sbjct 1240 AATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| ||||| |||||||||||| |||||||| ||||| |||| Sbjct 1191 AGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTT 1132 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||||||||| || ||||| || || | |||||||| || || | || ||| Sbjct 1131 CCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCTTCC 1072 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | || || || || ||||| || || || | || Sbjct 1071 TTGTCT-TGAATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCTACCTCAAGAGT 1013 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| || || || || |||||||| Sbjct 1012 AATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 974 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| ||||| ||||||||| ||||| ||||| || Sbjct 1656 CCTCCACGAAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAG 1597 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || ||||| ||||| || ||||| || || | |||||||| || || Sbjct 1596 AGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG 1537 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | |||||||| ||| ||||| | ||| || | ||| ||||| || || Sbjct 1536 ATCCCCTCCTTATCTTGAATCTTG-GATTTGACATTGTCAATAGTGTCGGAAGGTTCTAC 1478 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || || ||||| || ||||||||||| Sbjct 1477 TTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || ||||| || || ||||||||||||||| || || ||||| |||| Sbjct 963 AGACGGAGAACTAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTT 904 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| ||||| || ||||| ||||| | |||||||| || || | || || Sbjct 903 CCATCCTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGGAATACCTTCT 844 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| |||| |||||| | ||| ||||| || || || | || Sbjct 843 TTGTCTTGGATC-TTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGT 785 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || || || ||||| |||||||| Sbjct 784 AATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 746 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| || || ||||||||| ||||| ||||| || || |||| Sbjct 279 AGACGGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTT 220 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||||||||| || ||||| ||||| | |||||||| || || | ||| || Sbjct 219 CCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATTCCTTCT 160 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | ||| || | ||| ||||| || || || | || Sbjct 159 TTGTCT-TGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACCTCAAGAGT 101 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| || || || || |||||||| Sbjct 100 AATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 62 >seq4548 Length=666 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| |||||||| |||||||||||||| || || ||| Sbjct 227 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCAGAA 168 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || || |||||||| || || || || || | |||||||| || || Sbjct 167 AGAGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGA 108 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||| || |||||| ||| |||| || ||| || ||| || || ||||| Sbjct 107 ATTCCTTCTTTGTCT-TGAATCTTTGACTTGACGTTATCAATGGTATCAGAAGGTTCCAC 49 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || || ||||| ||||| ||||| |||||||| Sbjct 48 TTCAAGAGTGATGGTCTTTCCAGTTAAAGTTTTAACAAAGATCTGCAT 1 >seq4 Length=926804 Score = 104 bits (114), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| || || ||||||||| ||||| ||||| || Sbjct 390728 CCTCCACGAAGACGAAGAACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAG 390669 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | |||||||||||||| || ||||| ||||| | ||||| || || || Sbjct 390668 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGG 390609 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || ||| ||| || | ||| || | |||||| || ||| || Sbjct 390608 ATTCCTTCTTTATCT-TGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTAC 390550 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || || ||||| || || || || || |||||||| |||||| Sbjct 390549 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCATG 390501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314711560387799