Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq5 120 3e-22 >seq5 Length=897882 Score = 120 bits (132), Expect = 3e-22 Identities = 299/452 (66%), Gaps = 4/452 (1%) Strand=Plus/Minus Query 118428 TGTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCAT 118487 ||| ||||| ||| || || | || | ||| ||||||| | ||| | || || | Sbjct 895661 TGTTGGAAATGGGTAGGGTTCTCGAGTCAATTGTTGTTTCAGAGCATCAGTATGGTTTTT 895602 Query 118488 ATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTG 118547 ||| | ||||||||| ||||| || || | || ||||||| ||| | || | | Sbjct 895601 ATAAATATGAGCATCGCCAATAGTGTGAACAAAATCACCAGTTGTTATTCCACAAATTTT 895542 Query 118548 AGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACC--C 118605 |||||||| | ||||| | ||| || | ||||| ||||| |||| ||| | Sbjct 895541 TGCAATCATATGAGTCAAAAGTGAGTACGAAGCAATGTTAAATGGAACTCCCAAACCAAC 895482 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGA 118665 || | |||| | || ||||| || ||| | |||||| | | ||||||||| ||| Sbjct 895481 ATCACCGCTG--CGTTGATACAAGTGACAACTTAACTCCCCATCTTGAACATAAAATTGA 895424 Query 118666 CTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGTTGGGCAGGATTCCAGGCTGTT 118725 || | ||||||||||||| |||||| || || | | |||||||| || | | Sbjct 895423 ACTAGTGTATGACATGGAGGCAAAACCATTTCACCAAGATCAGATGGATTCCAAGCAGAT 895364 Query 118726 AAAACATGCCTTCTGCTATATGGTTCTACCTGTATACCCTCAATTAAATTCTGAATCTGA 118785 || | | ||||| | | || | || ||| ||||| | ||| | ||| Sbjct 895363 AAGATAATTCTTCTTGAAGAAGGGTTGTTCTTTATTTGGTCAATAACATTTGCTAGTTGA 895304 Query 118786 TCCACACCCTTTCCAGTATACTGAGACTCGCATCCTTTATATTCTGCCCCAAAAAATCTC 118845 || || || ||||| || || | || || ||| | ||||| || |||||| |||| Sbjct 895303 TCAACTCCTTTTCCTGTGTAGTCAGCATCAACTCCCTCATATTTAGCACCAAAATGTCTC 895244 Query 118846 CATTGAAAACCATAAACAGGCCCCAGATCTCC 118877 ||||| || ||||||||||| |||| ||| || Sbjct 895243 CATTGGAACCCATAAACAGGTCCCAAATCACC 895212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414453043096492