Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3059 93.3 3e-14 seq4 84.2 2e-11 >seq3059 Length=2231 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || |||||| | ||||| ||| ||||| |||| || ||| || Sbjct 1202 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1261 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| |||||| || || || || || || | || || | Sbjct 1262 GACACTATTGACAAT--GTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATC 1319 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | ||||||||||| ||||||||| | || || | | | | | || ||||||| Sbjct 1320 AACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACA 1379 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| | ||||||||| | ||| | ||||| || Sbjct 1380 ACATCCAAAAGGAGTCAACTCTTCATTTGGTTCTTCGTCTCCGTGGAGG 1428 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || ||| | ||||| || ||||| |||| || ||| || Sbjct 62 ATGCAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCC 121 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| |||||| || || ||||||||||| |||| || | Sbjct 122 GACACTATTGACAAT--GTCAAATCCAAGATTCAAGACAAAGAAGGAATTCCACCAGACC 179 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | ||||||||||| ||||||||| | || || | | | | | || ||||||| Sbjct 180 AACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACA 239 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | |||||||| | ||| | ||||| || Sbjct 240 ACATCCAAAAGGAGTCAACCCTTCATTTGGTCCTCCGTCTCCGTGGAGG 288 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || |||||| | ||||| ||| ||||| |||| || ||| || Sbjct 1430 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1489 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| |||||| || || || || || || | || || | Sbjct 1490 GACACTATTGACAAT--GTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGACC 1547 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | || |||||||| |||||||| | || || | | | | | || ||||||| Sbjct 1548 AACAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACA 1607 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| | ||||||||| | ||| | ||||| || Sbjct 1608 ACATCCAAAAGGAGTCAACTCTTCATTTGGTTCTTCGTCTTCGTGGAGG 1656 >seq4 Length=926804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | || || ||| || || |||| || || | Sbjct 390502 ATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 390561 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| |||||| || || || |||||||| | || || | Sbjct 390562 GATACAATTGACAAT--GTCAAATCTAAGATTCAAGATAAAGAAGGAATCCCACCAGATC 390619 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | ||||||||||| ||||||||| | || || | | | | | || ||||||| Sbjct 390620 AACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACA 390679 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | ||||||||| | ||| | ||||| || Sbjct 390680 ACATCCAAAAGGAGTCAACCCTTCATTTGGTTCTTCGTCTTCGTGGAGG 390728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355842002745681