Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4548 163 7e-35 seq3059 163 7e-35 seq4 127 5e-24 seq38 104 5e-17 >seq4548 Length=666 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| ||||| ||||||||||| ||||| | || || |||||||| || ||||| Sbjct 659 TGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCAAGCTGT 600 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || | | ||||||||| || |||| ||||| ||||| ||||||||| Sbjct 599 TTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTTT 540 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||| || ||||||||||| ||| ||||||||||| || || ||||| || Sbjct 539 GACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAGTC 480 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | |||||| Sbjct 479 AAGGTCTTAACAAAGATCTGCAT 457 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| | |||||| || |||||||| |||||||| || || | ||| Sbjct 453 TCCACGGAGACGGAGGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAG 394 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || |||||||| || || || || || ||||| || | | ||||||||| || || | Sbjct 393 AGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGGAT 334 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| || ||||| ||||||||| || ||||| || ||||||||||| || ||||| Sbjct 333 TCCCTCTTTGTCTTGGATCTTTGACTTAACGTTATCAATGGTGTCAGAAGGCTCTACCTC 274 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || ||||| || | ||||| ||||| | ||||| Sbjct 273 AAGAGTGATAGTTTTTCCAGTCAAGGTCTTAACAAAGATTTGCAT 229 >seq3059 Length=2231 Score = 163 bits (180), Expect = 7e-35 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| | ||||| || |||||||| |||||||| || || | ||| Sbjct 742 TCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAG 683 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || |||||||| || ||||| || || || || || | | ||||||||| || |||| Sbjct 682 AGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAAT 623 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||| ||||| ||||||||| || ||||| || ||||||||||| ||| ||||| Sbjct 622 ACCTTCTTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTC 563 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || ||||| || | ||||| ||||| | |||||| Sbjct 562 GAGAGTAATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 518 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| ||||| ||||| || || | ||| || |||||||| || ||||| Sbjct 948 TGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCAAGCTGT 889 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | | ||||||||| || |||| ||||| ||||| ||||||||| Sbjct 888 TTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTTT 829 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||| || ||||||||||| ||| ||||||||||| || || ||||| || Sbjct 828 GACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAGTC 769 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | |||||| Sbjct 768 AAGGTCTTAACAAAGATCTGCAT 746 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| ||||| ||||| || |||||||| | ||| || ||||||||||| || || Sbjct 1176 TGAAGAGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCTTCAAGTTGT 1117 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || | | ||||||||| || || | ||||||||||| || || || Sbjct 1116 TTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGAATTTTC 1057 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || |||||||||||||| ||| ||||| ||||| || |||||||| || Sbjct 1056 GACTTGACATTATCGATGGTGTCAGAAGGTTCTACCTCAAGAGTAATGGTCTTTCCAGTT 997 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | |||||| || || | |||||| Sbjct 996 AAAGTCTTGACGAAGATCTGCAT 974 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| | ||||| || ||||| ||||||||||| ||||| | || Sbjct 286 TCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAG 227 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || ||||||||||| || || || || || || || | | ||||||||| || |||| Sbjct 226 AGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAAT 167 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||| ||||| || ||||| ||| || || || || ||||| || ||| ||||| Sbjct 166 TCCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACCTC 107 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || |||||||| || | |||||| || || | |||||| Sbjct 106 AAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 62 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| | ||||| || |||||||| |||||||| || || | || Sbjct 514 TCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAGAG 455 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || ||||||||||| || ||||| || || ||||| | | |||||| || || || | Sbjct 454 AGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGGAT 395 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||| || || ||||| ||| || || || ||||||||||| ||| ||||| Sbjct 394 CCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGGTTCTACCTC 335 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || ||||| || | ||||| ||||| | ||||| Sbjct 334 GAGAGTAATAGTTTTTCCAGTCAAGGTCTTGACAAATATTTGCAT 290 Score = 127 bits (140), Expect = 5e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | |||||||| ||||| ||||||||||| ||||| | || Sbjct 1654 TCCACGAAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAG 1595 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || |||||||| || ||||| || || || || || | | ||||||||| || || | Sbjct 1594 AGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGAT 1535 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||| || || ||||| ||| || || || || ||||| || ||| || || Sbjct 1534 CCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTC 1475 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || | ||| || || || | |||||| Sbjct 1474 AAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| ||||| ||||||||||| ||||| | || || ||||||||||| || || Sbjct 1404 TGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGT 1345 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || | | |||||| || || || | || ||||| || || ||||| Sbjct 1344 TTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCTTGAATCTTG 1285 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || || || || ||||| || ||| || || ||||| || || ||||| || Sbjct 1284 GATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTTCCAGTC 1225 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||| || || || | |||||| Sbjct 1224 AAAGTTTTGACGAAAATCTGCAT 1202 >seq4 Length=926804 Score = 127 bits (140), Expect = 5e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | ||||| || ||||| ||||||||||| ||||| | || Sbjct 390726 TCCACGAAGACGAAGAACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAG 390667 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || ||||||||||| || || || || || || || | | |||||| || || || | Sbjct 390666 AGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGAT 390607 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||| || || || ||||| ||| || || || || || ||||| || ||||| Sbjct 390606 TCCTTCTTTATCTTGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTC 390547 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || || || | |||||| ||||| | ||||| Sbjct 390546 AAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCAT 390502 >seq38 Length=203164 Score = 104 bits (114), Expect = 5e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || || ||||| ||||||||||| || || | |||||| ||||| ||||| || | Sbjct 170979 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCT 170920 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || ||||||||||| || || || || || |||||||| ||||| || || ||| Sbjct 170919 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 170860 Query 211095 GTCTTTACAAACACCTGCATTT 211116 ||||| || || | ||||||| Sbjct 170859 GTCTTAACGAAAATTTGCATTT 170838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159082152760595