Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4548 132 1e-25 seq3059 132 1e-25 seq38 98.7 2e-15 seq4 95.1 3e-14 seq612 93.3 1e-13 >seq4548 Length=666 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| || || ||||||| |||||||| | | |||||| ||||| || ||||| Sbjct 659 TGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCAAGCTGT 600 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| || || | || ||||||||| || ||||||||||| ||||||||||||||| Sbjct 599 TTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTTT 540 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || || |||||||| || | ||| || || | || || || || || ||| Sbjct 539 GACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAGTC 480 Query 225691 AAAGTTTT 225698 || || || Sbjct 479 AAGGTCTT 472 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || || || ||||| |||| ||||| || | | |||||| ||||| Sbjct 440 AGGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTTCCATCC 381 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || |||||||| || | || ||||||||| || || || || || |||||| Sbjct 380 TCGAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGGATTCCCTCTTTGTCT 321 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| || || |||||||| || | || || || | ||||| || Sbjct 320 TGGATCTTTGACTTAACGTTATCAATGGTGTCAGAAGGCTCTACCTCAAGAGTGATAGTT 261 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | || | |||||| Sbjct 260 TTTCCAGTCAAGGTCTTAACAAAGATTTGCAT 229 >seq3059 Length=2231 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| || || ||||| | ||| ||||||| | |||||| |||||||| || || Sbjct 1176 TGAAGAGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCTTCAAGTTGT 1117 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| || || | || ||||||||| || || || |||||||||||||| || || Sbjct 1116 TTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGAATTTTC 1057 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||||||||||| || | ||| || || | || || ||||| || || Sbjct 1056 GACTTGACATTATCGATGGTGTCAGAAGGTTCTACCTCAAGAGTAATGGTCTTTCCAGTT 997 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| | ||||| Sbjct 996 AAAGTCTTGACGAAGATCTGCAT 974 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || || || || ||||| |||| ||||| || | | |||||| ||||| Sbjct 729 AGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTTCCATCC 670 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || ||||| || || | || ||||||||| || ||||||||||| |||||| Sbjct 669 TCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCT 610 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| || || |||||||| || | ||| || || | || || || Sbjct 609 TGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTT 550 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || ||||| || || Sbjct 549 TTTCCAGTCAAGGTCTT 533 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || || ||||| | ||||| || | | |||||| ||||| || ||||| Sbjct 948 TGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCAAGCTGT 889 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| | || ||||||||| || ||||||||||| ||||||||||||||| Sbjct 888 TTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTTT 829 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || || |||||||| || | ||| || || | || || || || || ||| Sbjct 828 GACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAGTC 769 Query 225691 AAAGTTTT 225698 || || || Sbjct 768 AAGGTCTT 761 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || ||||| || || ||||||| |||||||| | | ||| Sbjct 1651 ACGAAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGT 1592 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| || ||||| || ||||| || || | || ||||||||| || || || || Sbjct 1591 TCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCC 1532 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||| ||||| || ||| || || ||||| || | ||| || || | Sbjct 1531 CTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAG 1472 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || ||||||||||| | ||| | ||||| Sbjct 1471 AGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| || || ||||||| |||||||| | | |||||| |||||||| || || Sbjct 1404 TGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGT 1345 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| || || | || |||||| || || || || || ||||| ||||| ||||| Sbjct 1344 TTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCTTGAATCTTG 1285 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || ||| || || ||||| || | ||| || || | || || || || || ||| Sbjct 1284 GATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTTCCAGTC 1225 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 |||||||| | ||| | ||||| Sbjct 1224 AAAGTTTTGACGAAAATCTGCAT 1202 >seq38 Length=203164 Score = 98.7 bits (108), Expect = 2e-15 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || ||||| ||||||||||| || || || ||||| ||||||||||| ||| || Sbjct 170979 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGAT-TTTGGC 170921 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || ||| ||||||||| ||||| | || || || | ||||| ||||| || || | Sbjct 170920 TTTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAG 170861 Query 225693 AGTTTTTATGAACACTTGCATTT 225715 ||| || | ||| | |||||||| Sbjct 170860 AGTCTTAACGAAAATTTGCATTT 170838 >seq4 Length=926804 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || || |||||||| || ||||||||||| ||||| || Sbjct 232386 GAAAATTTGTCCATCAGTAATGGAAATTACATTTGTTGGAATATAAGCAGATACATCTCC 232445 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||| ||||| | || || | || || ||||||||||| || Sbjct 232446 AGCTTGAGTTTCAATAATTGGAAGAGCAGTAAGTGATCCACCTCC 232490 >seq612 Length=11789 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 7569 TATTA-CGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCG 7627 ||||| | || ||||| || | |||||||||||| | ||||| || | ||| || || | Sbjct 1093 TATTAACTGCTCATGCAATTCTAATGATTTTCTTTATGGTTATACCTGCTATAATTGGTG 1152 Query 7628 GTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGC 7687 | || || |||||| | ||||| |||||| | |||||||||||||| || || | Sbjct 1153 GGTTTGGTAATTGAATGGTTCCATTAATGTTAGGTGCTCCTGATATAAGGTTCCCTCGTT 1212 Query 7688 TTAACAATATAAGTTTTTGATTA 7710 | || ||||| || ||||||||| Sbjct 1213 TAAATAATATTAGATTTTGATTA 1235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192459341423882