Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq21 289 2e-73 seq16 93.3 4e-14 >seq21 Length=323752 Score = 289 bits (320), Expect = 2e-73 Identities = 518/751 (69%), Gaps = 4/751 (1%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 ||||| ||||| |||||||| |||||| ||| || |||||||| ||||||||||| | Sbjct 30246 ACACCGAATTTCTGGTATTCAGATACTTTCTTCTCAAAGAAATTGGTTTTGCCTTCAATT 30305 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 || | ||| ||||||||||||| || || | | || ||| | |||| ||| || || Sbjct 30306 GAGAGATTAACCATAAAATCAAATGGGTTCTTAGTATTATAAAGCTTTTGACAATTAAGT 30365 Query 4368 GCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATT 4427 |||| | | | || || ||| | || ||||| | | ||| | | | || ||| Sbjct 30366 TCTACCAATAGATGATCGGCAACATACTCGATATAATCACACATTAAACCTGAATTCATT 30425 Query 4428 CCAATTA-ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 || || | ||| ||||| || || | || | | | || | ||| ||| | ||||| || Sbjct 30426 CCGATCATATC-AACAGGAAGAGCATCAGTAAGATATTCCTTTTCAATACTAACGGCATC 30484 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA 4546 | | ||||| || ||||| |||| |||||| || || | ||||| | ||| | Sbjct 30485 TCTAATTATTTCCTTTATACGTTCTTCAGATGGCTTGTTCTCCAAGTAACTGTACATAAG 30544 Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| |||||||||| || || || || |||| | ||||| || || ||| ||||| Sbjct 30545 ACATGCAAAATCACGGTGTAACCCCTCATCTCGGGAAATCAACTCATTCGAATGTGTTAA 30604 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 |||||||| || || | || |||||||| ||||| || |||||||| ||||| ||||| Sbjct 30605 CCCGGGCATCAAGCCACGTTTCTTAAGCCAGAATATGGCAGCAAATGAACCAGAGAAGAA 30664 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTT 4725 ||| ||||| || || ||||| || | || || || || | ||| | |||||| Sbjct 30665 TATTCCTTCAACAGCTGCAAAAGCAATTACACGTTCTCCAAAAGTAGC-GTTTTTGTCGG 30723 Query 4726 TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785 ||||||| ||| ||||| | |||||| || | | | | |||| | | | ||||| Sbjct 30724 CAATCCATCTTAGAGCCCAATCAGCTTTCTTTCTGATGAAAGGAAATTCATCCAAAGCGT 30783 Query 4786 TAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 | || | |||| || | ||| | || |||| || || || || ||| |||| Sbjct 30784 TGAAGAGTTTATTTCTCTCATCCTGATCACGAATGTAGGTTTCAATAAGTTTCGAGTACA 30843 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 | ||| ||| |||||||| || ||||| ||||| || || || | | || || | | Sbjct 30844 TCTCACTATGAATATTTTCCATGGCAATTTGAAAACCATAGAAAAAGCGTGCCTCGGGGA 30903 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 | || ||||| || |||||||||| ||||| || ||||| || ||||| || || | Sbjct 30904 CCTGGACTTCCTTTGAAAATCTTTCAACTAAATTCTCGTTAACGATACCATCCGATGCAG 30963 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTA 4996 |||| || || || || || |||||||| Sbjct 30964 CAAAGAAGGCTAACACTCTTGAGATAAAGTA 30994 >seq16 Length=461423 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 6052 CAATTCCTATTTCTTTTACTTCTGTAAGGGATCGCCAATCTTGGTTAGCGCTTCCGATGT 6111 ||| ||||| |||||| |||| ||| | |||| ||||||||| || ||| || | || Sbjct 215563 CAACTCCTAATTCTTTAACTTGTGTCAATGATCTCCAATCTTGATTGGCGGAACCAACGT 215622 Query 6112 AAATGTGTCTTCCGTCAACAATCCAAAATTTAGTGTGAAGAATTCCACC 6160 ||| |||| | || |||||||||||| ||| || |||||||||||||| Sbjct 215623 AAAAGTGTTTCCCATCAACAATCCAAGCTTTTGTATGAAGAATTCCACC 215671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427025122451099