Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3059 147 5e-30 seq4 131 4e-25 seq4548 125 2e-23 seq38 95.1 3e-14 >seq3059 Length=2231 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | |||||| || ||||| ||||||||||||||||| | | |||||| Sbjct 280 GAGACGGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCT 221 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || ||| || || || || | || || ||||| | | |||||||| Sbjct 220 TCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATTCCTTC 161 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || |||||||| || ||||||| | || | |||| ||| ||||| |||||||| Sbjct 160 TTTGTCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACCTCAAGAGT 101 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || | |||||| ||||||| |||||| Sbjct 100 AATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 62 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||| ||||| ||||| || || ||||||| | |||||| |||||| Sbjct 1185 AGAACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCT 1126 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | || || ||||| | | ||| |||||||| ||| Sbjct 1125 TCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCT 1066 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| |||||| | || | | |||| ||| ||||| ||||||||||| || Sbjct 1065 TGAATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCTACCTCAAGAGTAATGGTC 1006 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||| ||||||| |||||| Sbjct 1005 TTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 974 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||| ||||| ||||||||||||||||| | | |||||| |||||| Sbjct 1413 AGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCT 1354 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | || || || || | | ||| || ||||| ||| Sbjct 1353 TCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCT 1294 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||||||| | || | |||| ||| ||||||||||||||||| ||| Sbjct 1293 TGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTT 1234 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||| || ||||| | |||||| Sbjct 1233 TTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||| ||||| ||||||||||||||||| | | |||||| ||||| Sbjct 1641 AGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCC 1582 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | || || ||||| | | ||| || ||||| ||| Sbjct 1581 TCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCCTCCTTATCT 1522 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||||||| | || | |||| ||| ||||||||||||||||| ||| Sbjct 1521 TGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTT 1462 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||| || ||||| | |||||| Sbjct 1461 TTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | |||||| || |||||||| ||||||||||| || | | |||||| Sbjct 508 GAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTTCT 449 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| || || ||||| | || || || || | | ||| || Sbjct 448 TCCATCTTCAAGTTGCTTT--CCAGCAAAGATTAATCTTTGTTGATCTGGTGGGATCCCC 391 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| || ||||||| | || | | |||| ||| ||||| || ||| Sbjct 390 TCCTTATCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGGTTCTACCTCGAGA 331 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| || || | ||||| || || | ||||| Sbjct 330 GTAATAGTTTTTCCAGTCAAGGTCTTGACAAATATTTGCAT 290 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | |||||| || |||||||| ||||||||||| || | | |||||| Sbjct 736 GAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCT 677 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || ||| || || || || | || || ||||| | | || ||||| Sbjct 676 TCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTC 617 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||| || ||| || || | || | | |||| ||| ||||| || ||||| Sbjct 616 TTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGT 557 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||| || || | ||||| || |||| |||||| Sbjct 556 AATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 518 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||| || ||||| ||||| |||||||| || | | |||||| Sbjct 964 GAGACGGAGAACTAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCT 905 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || ||| || || ||||| | || || ||||| | | || ||||| Sbjct 904 TCCATCCTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGGAATACCTTC 845 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||| || ||| || || | || | | |||| ||| ||||| || ||||| Sbjct 844 TTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGT 785 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||| || || | ||||| || |||| |||||| Sbjct 784 AATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 746 >seq4 Length=926804 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || ||||| ||||||||||||||||| | | |||||| |||||| Sbjct 390713 AGAACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCT 390654 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | || || || || | | ||||||||| || ||| Sbjct 390653 TCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTTTATCT 390594 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||||||| | || | | || ||| |||||| |||||||| || ||| Sbjct 390593 TGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTT 390534 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| || || | ||||| Sbjct 390533 TTGCCTGTCAAAGTCTTAACAAAAATTTGCAT 390502 >seq4548 Length=666 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | ||||| || |||||||| ||||||||||| || | | |||||| Sbjct 447 GAGACGGAGGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCT 388 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || ||| || ||||| || | || || ||||| | | |||||| || Sbjct 387 TCCATCCTCGAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGGATTCCCTC 328 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||| || ||| || || | || | | |||| ||| |||||| |||||||| Sbjct 327 TTTGTCTTGGATCTTTGACTTAACGTTATCAATGGTGTCAGAAGGCTCTACCTCAAGAGT 268 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || || | ||||| || |||| ||||| Sbjct 267 GATAGTTTTTCCAGTCAAGGTCTTAACAAAGATTTGCAT 229 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||||||||| ||||| ||||||||||||||||| | | |||||| ||||| || Sbjct 666 GACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTC 607 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| || || || || | || || ||||| | | || ||||| || ||||| Sbjct 606 AAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTG 547 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || ||| || || | || | | |||| ||| ||||| || |||||||||||||| Sbjct 546 GATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTT 487 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | ||||| || |||| |||||| Sbjct 486 TCCAGTCAAGGTCTTAACAAAGATCTGCAT 457 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || ||||| |||||||| || | | |||||| ||||| || | Sbjct 207 CAAG-TGGAGAGTTGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCGA 149 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || ||||| || | || || ||||| | | |||||||| || ||||||| Sbjct 148 GTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAA 89 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||||| | || | | | || ||| || ||||||||||| || || || | Sbjct 88 TCTTTGACTTGACGTTATCAATGGTATCAGAAGGTTCCACTTCAAGAGTGATGGTCTTTC 29 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||| || || |||| |||||| Sbjct 28 CAGTTAAAGTTTTAACAAAGATCTGCAT 1 >seq38 Length=203164 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||| || ||||| | || ||||| | | ||||||||| || ||||| ||||| | Sbjct 170979 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCT 170920 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| | || | | | ||||| ||| ||||||||||| ||||| || || || ||| Sbjct 170919 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 170860 Query 152085 GTCTTCACGAAGACCTGCATTT 152106 ||||| ||||| | ||||||| Sbjct 170859 GTCTTAACGAAAATTTGCATTT 170838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153751274003713