Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3059 181 2e-40 seq4548 172 1e-37 seq4 140 7e-28 seq38 125 1e-23 seq21 120 6e-22 >seq3059 Length=2231 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || |||| ||| | || ||||| |||||||||||||||| Sbjct 745 ACCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGA 686 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | |||||||| || ||||| || ||||| ||||| | ||||||||| || Sbjct 685 AAGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGG 626 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || |||||||||||||||| || ||| | || || ||||| |||| ||| || Sbjct 625 AATACCTTCTTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTAC 566 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || || || || ||||| |||||||| || |||||||| Sbjct 565 CTCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 518 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || | ||| | || || ||||| ||||||||||||| Sbjct 973 ACCTCCACGGAGACGGAGAACTAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGA 914 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | |||||||| || ||||| || |||||||| || | ||||||||| || Sbjct 913 AAGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGG 854 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || |||||||||||||||| || ||| | || || ||||| |||| ||| || Sbjct 853 AATACCTTCTTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTAC 794 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || || || || ||||| |||||||| || |||||||| Sbjct 793 CTCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 746 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282870 GAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCA 282929 ||||| ||||| || ||||| |||| ||| | || || |||||||||||||| ||| Sbjct 1659 GAACCTCCACGAAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCA 1600 Query 282930 GCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCC 282989 | || || | |||||||| || ||||| || ||||| ||||| | ||||||||| Sbjct 1599 GAGAGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGT 1540 Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || |||||||| ||||| ||||| | ||| || | || |||||||| |||| ||| Sbjct 1539 GGGATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCT 1480 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || || || || |||||||| || ||||| |||||||| Sbjct 1479 ACTTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || |||| ||| | || || |||||||||||||| |||| Sbjct 289 ACCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGA 230 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||||| || |||||||| || ||||| || || | ||||||||| || Sbjct 229 GAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGG 170 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || |||||||| ||||| | ||| || | || |||||||| |||| ||| || Sbjct 169 AATTCCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTAC 110 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || ||||| || || |||||||| ||||| |||||||| Sbjct 109 CTCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 62 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| |||| ||| | || || |||||||||||||| |||| Sbjct 1429 ACCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGA 1370 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||||| || |||||||| || ||||| || || | |||||| || || Sbjct 1369 GAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGG 1310 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| ||||| ||||| | ||| || | || |||||||| |||| ||| || Sbjct 1309 GATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTAC 1250 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| || || || || |||||||| || ||||| |||||||| Sbjct 1249 TTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || |||| ||| | || ||||| |||||||||||||||| Sbjct 517 ACCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGA 458 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||||| || ||||| || || |||||||| || | |||||| || || Sbjct 457 GAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGG 398 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| ||||| ||||| | ||| || | || || ||||| |||| ||| || Sbjct 397 GATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGGTTCTAC 338 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || || || || ||||| ||||| || ||||| ||||| Sbjct 337 CTCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTGACAAATATTTGCAT 290 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| |||| ||| | || || ||||| || || || || | Sbjct 1201 ACCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCGGA 1142 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | ||||| || |||||||| || ||||| ||||| | ||||||||| || Sbjct 1141 AAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGG 1082 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||| || || | || || ||||||| ||||| |||| ||| || Sbjct 1081 GATCCCTTCCTTGTCTTGAATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCTAC 1022 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || ||||| || || |||||||| ||||| |||||||| Sbjct 1021 CTCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 974 >seq4548 Length=666 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || |||| || | || ||| ||||| ||||||||||||| Sbjct 228 ACCTCCACGAAGACGGAGAACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCAGA 169 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | |||||||| |||||||| || || || ||||| | ||||||||| || Sbjct 168 AAGAGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGG 109 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || |||||||| ||||||| || ||| |||| || || || |||| ||| || Sbjct 108 AATTCCTTCTTTGTCTTGAATCTTTGACTTGACGTTATCAATGGTATCAGAAGGTTCCAC 49 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| |||||||| ||||| || || ||||| ||||| || |||||||| Sbjct 48 TTCAAGAGTGATGGTCTTTCCAGTTAAAGTTTTAACAAAGATCTGCAT 1 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || |||| || | || ||||| |||||||||||||||| Sbjct 456 ACCTCCACGGAGACGGAGGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGA 397 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | |||||||| |||||||| || || || ||||| | ||||||||| || Sbjct 396 AAGAGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGG 337 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||| |||||||||||||||| || ||| |||| || ||||| |||| || || Sbjct 336 GATTCCCTCTTTGTCTTGGATCTTTGACTTAACGTTATCAATGGTGTCAGAAGGCTCTAC 277 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| || || || ||||| |||||||| || || ||||| Sbjct 276 CTCAAGAGTGATAGTTTTTCCAGTCAAGGTCTTAACAAAGATTTGCAT 229 Score = 165 bits (182), Expect = 2e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||| |||| || || | |||||||| || ||||| || ||||| Sbjct 647 TCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAA 588 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | ||||||||| |||||||| || |||||||||||||||| || ||| | Sbjct 587 ATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTTTGACTTAACGTTG 528 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| |||| ||| || |||||||| || || || || ||||| |||||||| Sbjct 527 TCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTAACA 468 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 467 AAGATCTGCAT 457 >seq4 Length=926804 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282870 GAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCA 282929 ||||| ||||| || ||||| |||| ||| | || || |||||||||||||| ||| Sbjct 390731 GAACCTCCACGAAGACGAAGAACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCA 390672 Query 282930 GCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCC 282989 | || || | ||||| || |||||||| || ||||| || || | |||||| || Sbjct 390671 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGT 390612 Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || || || || ||||| ||||| | ||| || | || || || || |||| || Sbjct 390611 GGGATTCCTTCTTTATCTTGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCT 390552 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || |||||||| || || || |||||||||||||| || || ||||| Sbjct 390551 ACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCAT 390502 >seq38 Length=203164 Score = 125 bits (138), Expect = 1e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||| || | |||||||||||| || || || || ||||||||||| || ||| Sbjct 170979 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCT 170920 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | ||||| || || || | |||||||| |||||||| |||||||| || | | Sbjct 170919 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 170860 Query 283080 GTCTTAACGAATATCTGCATTT 283101 ||||||||||| || ||||||| Sbjct 170859 GTCTTAACGAAAATTTGCATTT 170838 >seq21 Length=323752 Score = 120 bits (132), Expect = 6e-22 Identities = 261/387 (67%), Gaps = 4/387 (1%) Strand=Plus/Plus Query 43979 TTTGCCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAA 44038 ||| |||||| || || || || | || ||||| || || || || || |||| ||| | Sbjct 162440 TTTACCAAGCTTCTACCTCAGAACTTTATGGAAAAGTCCAAGAAATCCCCCAAAAAGAGA 162499 Query 44039 GGACTCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTT 44098 || || |||||||| || |||||||||| || || || | || || |||||||| Sbjct 162500 CAACACCATTTTATCCACGAAGTCCATATGCAGTAGCAAAATTGTACGCTTATTGGATAA 162559 Query 44099 GTAAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACG 44158 |||||||||||| || | ||||| || || | ||| ||| |||| || ||||| | Sbjct 162560 TTAAAAATTATCGTGAAGCATATGGAATATTTGCTTGCAATGGTATTTTATTTAATCATG 162619 Query 44159 AAAGTCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATA 44218 || || | |||||| || | || || || | ||||| || | || || || || | Sbjct 162620 AATCACCAAGAAGAGGTAATAACTTTGTAACAAGAAAAATTACAAGGGCTGTAGCTAAAA 162679 Query 44219 TTTTCAACGGGACAGAAAAATGCATGTAT--CTAGGAAACATAGACTCTAAAAGAGATTG 44276 || | || || || ||| ||| || || || | || ||||| | ||||| Sbjct 162680 TTAGTATAGGTGTTCAAGAA-ACAT-TATTACTTGGTAATTTGGATGCTAAACGTGATTG 162737 Query 44277 GGGATATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAACAAGACAGGTCAGA 44336 ||| |||| || ||||| ||||| |||||| || | ||||| || |||| Sbjct 162738 GGGTCATGCAAAAGAGTATGTTGAAGCTATGTGGAGAATTCTTCAACACGATGAACCAGA 162797 Query 44337 CGACTACGTTATTGCAACTGGAAAGAC 44363 |||| |||||||| || || || || Sbjct 162798 TGACTTTGTTATTGCTACAGGTAAAAC 162824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046676126439762