Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq21 260 1e-64 seq108 93.3 4e-14 >seq21 Length=323752 Score = 260 bits (288), Expect = 1e-64 Identities = 510/743 (69%), Gaps = 22/743 (3%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCT 23263 ||| ||||| | ||| || ||||| || |||| || || ||||| || || || | Sbjct 30242 CATTACACCGAATTTCTGGTATTCAGATACTT-TCTTCTCAAAGAAATTGGTTTTGCCTT 30300 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATG 23323 | | ||| | ||| |||||||||||||||| || ||||||||| | ||||| || Sbjct 30301 CAATTGAGAGATTAACCATAAAATCAAATGGGTTCTTAGTATTATAAA--GCTTT---TG 30355 Query 23324 ATAATTCCTTT-----AAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATC 23378 | |||| || || || ||| || ||| | || ||||| | |||||| ||| | Sbjct 30356 ACAATTAAGTTCTACCAATAGATGATCGGCAACATACTCGATATAATCACACATTAAACC 30415 Query 23379 ATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGA-ATAGTTTTTCAATGG 23437 | || || || || | | || |||| |||||| ||||| || |||||||| Sbjct 30416 TGAATTCATTCCGATCATATCAACAGGAAGAGCATCAG-TAAGATATTCCTTTTCAATAC 30474 Query 23438 AAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTT---AAAT 23494 ||| |||||| ||||||||| ||| ||||||| | ||| | || || | Sbjct 30475 TAACGGCATCTCTAATTATTTCCTTTATACGTTCTTCA---GATGGCTTGTTCTCCAAGT 30531 Query 23495 ACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCAT 23554 | | ||| | |||||||||||||| |||| || ||||| | |||||| |||| Sbjct 30532 AACTGTACATAAGACATGCAAAATCACGGTGTAACCCCTCATCTCGGGAAATCAACTCAT 30591 Query 23555 TAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATG 23614 | ||| |||||| || ||||| || || ||||| |||| ||| ||||| |||||||||| Sbjct 30592 TCGAATGTGTTAACCCGGGCATCAAGCCACGTTTCTTAAGCCAGAATATGGCAGCAAATG 30651 Query 23615 ATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTG 23674 | || || ||||| || || |||||||| ||||| || | | |||| ||||| || | Sbjct 30652 AACCAGAGAAGAATATTCCTTCAACAGCTGCAAAAGCAATTACACGTTCTCCAAAAGTAG 30711 Query 23675 CATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTA-CACACTCAATT 23733 | || | || | ||||||| || | ||||| ||| ||| | | | | | |||| Sbjct 30712 CGTTTTTGTCGGCAATCCATCTTAGAGCCCAATCAGCTTTCTTTCTGATGAAAGGAAATT 30771 Query 23734 GTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATT 23793 | ||| || || ||||| | || | || || | ||| || || || ||||| Sbjct 30772 CATCCAA-AGCGTTGAAGAGTTTATTTCTCTCATCCTGATCACGAATGTAGGTTTCAATA 30830 Query 23794 AGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACAT 23853 ||| ||||| ||| |||||||||||| || ||||| ||||| ||||| ||| | Sbjct 30831 AGTTTCGAGTACATCTCACTATGAATATTTTCCATGGCAATTTGAAAACCATAGAAAAAG 30890 Query 23854 CTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATA 23913 | || || | | || || || || ||||||||| | ||||||| |||||||| ||| Sbjct 30891 CGTGCCTCGGGGACCTGGACTTCCTTTGAAAATCTTTCAACTAAATTCTCGTTAACGATA 30950 Query 23914 CCATCACTAGCAGCAAAGAAAGC 23936 ||||| ||||||||||| || Sbjct 30951 CCATCCGATGCAGCAAAGAAGGC 30973 >seq108 Length=97238 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 139427 CAGGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTG 139486 |||| || ||||||| ||||||||||||||||| | |||||||| || || || |||| Sbjct 87673 CAGGAGTTTTACATACCAAATTTTGGATTGTTGACCAAAAACATATCTACATAGGTAGTG 87614 Query 139487 CTAACATGGACTGGCGATCACTAACTCAAGTAAAAGAATTAGGT 139530 | |||||||| ||| |||| | ||| |||| |||||| | ||| Sbjct 87613 CAAACATGGATTGGAAATCATTGACTGAAGTCAAAGAAATGGGT 87570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521457343024200