Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq41 122 1e-22 >seq41 Length=195677 Score = 122 bits (134), Expect = 1e-22 Identities = 461/722 (64%), Gaps = 26/722 (4%) Strand=Plus/Minus Query 155745 GATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAATTTTTAGTTTCAACG 155804 ||||| || || || || || || || | ||||| || ||||||| |||| | Sbjct 84081 GATTGTGCAGCACGAACTAAACCCTCTATCTCAGCACCAGAAAAATTTTTTGTTTTTTTG 84022 Query 155805 GCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAGATTTCATTTTAGCAACG 155864 || ||| ||||| || ||||| ||||| | | || | |||| || || Sbjct 84021 GCAATTAATTTTAAATCAACGTCCTCTCCTAATTTATCGTATTCTCTCATCTTTGCTGTA 83962 Query 155865 TGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAAT 155924 || | | ||| ||||| | |||||| || || || |||||| || || || | | | Sbjct 83961 TGGATGTGTAATATTTGTACACGCCCATTCTCGTCAGGTAATGATATCTCCATTTGTACT 83902 Query 155925 TCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCT 155984 |||| | |||||||||||||||||||| ||||| | || ||| || |||||||| Sbjct 83901 TCCATTCTACCAGGTCTTAATAATGCTTCATCAATCATATCTCTTCTATTTGTCATACCA 83842 Query 155985 ATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACT 156044 || | |||||||||||||| || ||||| || ||||| | | | |||||||||| Sbjct 83841 ATAACTAAAATGTTGTTTAGTTGATCAACACCATCCATTTTTGTTAGGATTTGATTGACT 83782 Query 156045 ACGGCGTCGTG----CGTG--------GCGTTATCACCGCGTTTTTTACACAGAGCATCT 156092 || | ||||| | | || | || | || |||||| | |||||| Sbjct 83781 ACTGTATCGTGAACACCAGATGATCCAGCCTGTGTTCCTCTTTGTTTACATATAGCATCG 83722 Query 156093 ATTTCATCGAAGACGATAACGTGTAATCCGCTGGCT--AAACCCAATTTNNNNNNNNNNN 156150 ||||||||||||| |||| || | |||| | ||| || | Sbjct 83721 ATTTCATCGAAGATAATAATATGGA--GAGCTGAATTGTTACCACATCTTTTGAATTCCT 83664 Query 156151 NNNNAGCCTCTTGAAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTA 156210 ||| || || ||| ||| | |||||||| |||||| |||||||| | | Sbjct 83663 CCTCAGCATCACCGAATAATTTTCTTATATTAGCTTCACTTTCACCAACATATTTATCCA 83604 Query 156211 ATAATTCAGGACCGTTAACTATTTTGACGGGTC---GTGATTTAAAAGCTTGAGCGATAC 156267 ||| || ||| |||||||| |||||| || || | |||||| | || | | || Sbjct 83603 ATATTTGAGGTCCGTTAACGATTTTG--GGTTCTCTGGCATTTAACA-TTTTACCTATTT 83547 Query 156268 AGCGAGCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATAT 156327 || || |||||||||||||| || |||||||| || | | | || | | Sbjct 83546 GACGGGCTATTAATGTTTTACCAGTTCCTGGAGGTCCATAAAGTAGGATACCACGGACGT 83487 Query 156328 GTTTACAACCTAATTTTTCAGTTATTTCTACCGGAACTGATCT--GGAAGCAAATGCTCT 156385 |||| ||||||| |||| ||| || | | |||| |||| || ||||| Sbjct 83486 GTTTCATGCCTAATTGTTCAACATGCTCTGGTGGGAATAATCTACTGAAG--AAAGCTCT 83429 Query 156386 TCGAAAAATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCA 156445 || || || ||| ||||||||||| || || || | ||||| || |||| ||| Sbjct 83428 TCTGAAGATTGCAGAGAATTCTTTATCTAAACCACCAATTCCCATACTTTCGAAATCCCA 83369 Query 156446 AT 156447 || Sbjct 83368 AT 83367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667035984316680