Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4548 165 2e-35 seq3059 152 1e-31 seq4 152 1e-31 seq38 107 5e-18 seq5 95.1 3e-14 >seq4548 Length=666 Score = 165 bits (182), Expect = 2e-35 Identities = 162/208 (78%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||| | || ||||| || ||||| || || |||||| || || Sbjct 4 CAGATCTTTGTTAAAACTTTAACTGGAAAGACCATCACTCTTGAAGTGGAACCTTCTGAT 63 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||||||| |||||||||||||| || || ||||| ||| Sbjct 64 ACCATTGATAACGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAACAA 123 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| |||||||| ||||| |||||||| |||||| | || || ||| | Sbjct 124 AGATTGATTTTCGCTGGAAAACAACTCGAGGATGGAAGAACTCTTTCTGACTACAACATT 183 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| |||||||| || || |||| || Sbjct 184 CAAAAGGAATCAACTCTCCA-CTTGGTT 210 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || |||||||| || || |||||||| ||| || ||| Sbjct 460 CAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCTGAC 519 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || |||||| || ||||||||||| || || || ||||| ||| Sbjct 520 ACCATTGACAACGTTAAGTCAAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAACAA 579 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||||||||| || |||||||| ||||| | ||||| ||| || Sbjct 580 AGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACAACATC 639 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| || ||| Sbjct 640 CAAAAGGAGTCAACTCTTCAT 660 >seq3059 Length=2231 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || ||||| || || || || ||||| ||| || ||| Sbjct 977 CAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCTGAC 1036 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| || ||||| ||||| ||||| ||||| || ||||| ||| Sbjct 1037 ACCATCGATAATGTCAAGTCGAAAATTCAAGACAAGGAAGGGATCCCACCAGACCAACAA 1096 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| || ||||||||||| |||||| |||||||||| | Sbjct 1097 AGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCCGATTATAATATT 1156 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || ||||| || ||| | ||| Sbjct 1157 CAAAAGGAGTCAACTCTTCATTTGGTT 1183 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || ||||| || || || || ||||| ||| || ||| Sbjct 65 CAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCCGAC 124 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| |||||||| |||||||||||||| || || ||||| ||| Sbjct 125 ACTATTGACAATGTCAAATCCAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAACAA 184 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| || ||||||||||| ||||| | ||||| ||| || Sbjct 185 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAACATC 244 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| || ||| Sbjct 245 CAAAAGGAGTCAACCCTTCAT 265 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || |||||||| || || |||||||| ||| || ||| Sbjct 749 CAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCTGAC 808 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || |||||| || ||||||||||| || || || ||||| ||| Sbjct 809 ACCATTGACAACGTTAAGTCAAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAACAA 868 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||||||||| || |||||||| |||||| | || || ||| | Sbjct 869 AGATTAATCTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTTTCTGACTACAACATT 928 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || ||||| || ||| | ||| Sbjct 929 CAAAAGGAGTCAACCCTTCATTTAGTT 955 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | || |||||||| || || || || || ||| || ||| Sbjct 1433 CAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCCGAC 1492 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| |||||||| || || || || ||||| || ||||| ||| Sbjct 1493 ACTATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGACCAACAA 1552 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||||||||| || |||||||| ||||| | ||||| ||| || Sbjct 1553 AGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACAACATC 1612 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || ||||| || ||| | ||| Sbjct 1613 CAAAAGGAGTCAACTCTTCATTTGGTT 1639 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || |||||||| || || |||||||| ||| || ||| Sbjct 521 CAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCTGAC 580 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || |||||| || ||||||||||| || || || ||||| ||| Sbjct 581 ACCATTGACAACGTTAAGTCAAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAACAA 640 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||||||||| || |||||||| |||||| | || || ||| || Sbjct 641 AGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTTTCTGACTACAACATC 700 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||| ||||| || ||| Sbjct 701 CAGAAAGAGTCAACCCTTCAT 721 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | || |||||||| || || || || || ||| || ||| Sbjct 1205 CAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCCGAC 1264 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| |||||||| || || || || ||||| || || || ||| Sbjct 1265 ACTATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAACAA 1324 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| || ||||||||||| ||||| | ||||| ||| || Sbjct 1325 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAACATC 1384 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || ||||| || ||| | ||| Sbjct 1385 CAAAAGGAGTCAACTCTTCATTTGGTT 1411 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || |||||||| || || |||||||| ||| || ||| Sbjct 293 CAAATATTTGTCAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCTGAC 352 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| |||||||| || || || || ||||| || || || ||| Sbjct 353 ACCATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAACAA 412 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| || || ||||||||||| ||||| | || || ||| || Sbjct 413 AGATTAATCTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTCTCTGACTACAACATC 472 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||| ||||| || ||| Sbjct 473 CAGAAAGAGTCAACCCTTCAT 493 >seq4 Length=926804 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||| | ||||| ||||| ||||| || ||||| || || || Sbjct 390505 CAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTGAT 390564 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| |||||||| || |||||||||||||| || || || ||| Sbjct 390565 ACAATTGACAATGTCAAATCTAAGATTCAAGATAAAGAAGGAATCCCACCAGATCAACAA 390624 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| || ||||||||||| ||||| | ||||| ||| || Sbjct 390625 AGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAACATC 390684 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || ||||| || ||| | ||| Sbjct 390685 CAAAAGGAGTCAACCCTTCATTTGGTT 390711 >seq38 Length=203164 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || || || ||||| || || || || ||||| Sbjct 170843 CAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTCGAGCCATCAGAT 170902 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| || || || ||||||||||||||||| || ||||| ||| Sbjct 170903 ACCATCGAAAATGTAAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCAGACCAACAA 170962 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || ||||| Sbjct 170963 CGTCTTATTTTTGCCGG 170979 >seq5 Length=897882 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | || |||||||| || || || ||||| || ||| || Sbjct 723801 CAAATTTTCGTAAAAACTTTAACTGGAAAAACAATAACTCTTGAGGTTGAGGCCTCCGAT 723860 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || ||||| || || |||||||| || || || ||||||||| Sbjct 723861 ACTGTTGATAATGTTAAGACTAAGATCCATGAAAAAGAAGGTATTCCACCAGACCAGCAA 723920 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || ||||| Sbjct 723921 CGGCTTATTTTTGCCGG 723937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203658666543382