Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2 172 1e-37 seq11 86.0 1e-11 seq1 86.0 1e-11 >seq2 Length=16759152 Score = 172 bits (190), Expect = 1e-37 Identities = 280/403 (69%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143 ||| ||| || || || || ||||| ||||||||||||||||||||||| |||| ||||| Sbjct 11787808 TTTATCAGGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAGAAATTCCACAAAAAGAAA 11787749 Query 61144 GGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTT 61203 || || ||||||||| | || || |||| || |||||| |||| || | ||||| Sbjct 11787748 CAACACCATTTTATCCTAGAAGTCCTTATGCAGTAGCAAAATTATATGCATTTTGGATAA 11787689 Query 61204 GTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACG 61263 ||||||||| || || | |||||||| |||| ||||| || | || ||||| | Sbjct 11787688 TTAAAAATTATCGTGAAGCATATGGAATTTTTGCTTGTAATGGAATATTATTTAATCATG 11787629 Query 61264 AGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATA 61323 | || | |||||| || | ||||| || | |||||||| | || || || || | Sbjct 11787628 AATCACCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTACAAGAGCTGTAGCTAAAA 11787569 Query 61324 TTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGG 61383 || || ||||| || || | | ||| || || | || ||||| | ||||||| Sbjct 11787568 TTAATATAGGTGTTCAAGAAACATTATCTCTTGGTAATTTGGATGCTAAACGTGATTGGG 11787509 Query 61384 GATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATG 61443 | |||| |||| ||| | ||||| |||||| || | ||||| ||| |||||| Sbjct 11787508 GCCATGCAAAAGAGTATGTAGAGGCAATGTGGAGAATCCTCCAACATGATGTAGCAGATG 11787449 Query 61444 ACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAATT 61486 | | ||||| | || ||| | || ||||| | ||||| Sbjct 11787448 ATTTTGTTATATCTACAGGAAAAACTGAAAGTGTAAGAGAATT 11787406 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 5496867 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 5496926 Query 165769 CCCCACGATGGGC 165781 |||| | ||||| Sbjct 5496927 CCCCGCATTGGGC 5496939 >seq11 Length=79446 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 4223 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 4282 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 4283 CCCGCATTGGGC 4294 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 73384 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 73443 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 73444 CCCGCATTGGGC 73455 >seq1 Length=11693564 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 11454351 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 11454410 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 11454411 CCCGCATTGGGC 11454422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822170295050