Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq2 172 1e-37
seq11 86.0 1e-11
seq1 86.0 1e-11
>seq2
Length=16759152
Score = 172 bits (190), Expect = 1e-37
Identities = 280/403 (69%), Gaps = 0/403 (0%)
Strand=Plus/Minus
Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143
||| ||| || || || || ||||| ||||||||||||||||||||||| |||| |||||
Sbjct 11787808 TTTATCAGGCTTCTACCTCAGAACTTTATGGAAAAGTTCAAGAAATTCCACAAAAAGAAA 11787749
Query 61144 GGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTT 61203
|| || ||||||||| | || || |||| || |||||| |||| || | |||||
Sbjct 11787748 CAACACCATTTTATCCTAGAAGTCCTTATGCAGTAGCAAAATTATATGCATTTTGGATAA 11787689
Query 61204 GTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACG 61263
||||||||| || || | |||||||| |||| ||||| || | || ||||| |
Sbjct 11787688 TTAAAAATTATCGTGAAGCATATGGAATTTTTGCTTGTAATGGAATATTATTTAATCATG 11787629
Query 61264 AGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATA 61323
| || | |||||| || | ||||| || | |||||||| | || || || || |
Sbjct 11787628 AATCACCAAGAAGAGGTAATAATTTTGTAACAAGAAAAATTACAAGAGCTGTAGCTAAAA 11787569
Query 61324 TTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGG 61383
|| || ||||| || || | | ||| || || | || ||||| | |||||||
Sbjct 11787568 TTAATATAGGTGTTCAAGAAACATTATCTCTTGGTAATTTGGATGCTAAACGTGATTGGG 11787509
Query 61384 GATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATG 61443
| |||| |||| ||| | ||||| |||||| || | ||||| ||| ||||||
Sbjct 11787508 GCCATGCAAAAGAGTATGTAGAGGCAATGTGGAGAATCCTCCAACATGATGTAGCAGATG 11787449
Query 61444 ACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAATT 61486
| | ||||| | || ||| | || ||||| | |||||
Sbjct 11787448 ATTTTGTTATATCTACAGGAAAAACTGAAAGTGTAAGAGAATT 11787406
Score = 87.8 bits (96), Expect = 4e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||
Sbjct 5496867 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 5496926
Query 165769 CCCCACGATGGGC 165781
|||| | |||||
Sbjct 5496927 CCCCGCATTGGGC 5496939
>seq11
Length=79446
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||||
Sbjct 4223 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 4282
Query 165770 CCCACGATGGGC 165781
||| | |||||
Sbjct 4283 CCCGCATTGGGC 4294
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||||
Sbjct 73384 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 73443
Query 165770 CCCACGATGGGC 165781
||| | |||||
Sbjct 73444 CCCGCATTGGGC 73455
>seq1
Length=11693564
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||||
Sbjct 11454351 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 11454410
Query 165770 CCCACGATGGGC 165781
||| | |||||
Sbjct 11454411 CCCGCATTGGGC 11454422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057822170295050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |