Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 179 4e-40 >seq2 Length=16759152 Score = 179 bits (198), Expect = 4e-40 Identities = 427/643 (66%), Gaps = 8/643 (1%) Strand=Plus/Minus Query 16693 TTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATT 16752 ||| || || || || ||||| ||||| | || ||||| |||| |||||||| || || Sbjct 14764719 TTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATATTAACCATAAAATCAAAGGGGTT 14764660 Query 16753 AGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTC 16812 || | | | | ||| || | ||||| | | || || |||||| |||| Sbjct 14764659 CTTAACATTATAAAGTTTTGAACAATTAAGTTCCACCAACAAATGGTCAGCTACATATTC 14764600 Query 16813 TATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGT 16872 |||||| |||||||| |||||||||| || | | || |||||||| || || Sbjct 14764599 AATATATGTACACATTAAACGTGAGTTCATTCCAATCATATCAACAGGAAGAGCATCTGT 14764540 Query 16873 CAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGA 16932 | || | || ||| |||| || | |||||||| | ||||| || || Sbjct 14764539 AAGGTATTCCTTTTCAATATCAACTGCATTTTTAATAATTTCTTTTATACGTTCTTCAGA 14764480 Query 16933 CGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTC 16992 ||| | | || ||| | ||||||| || || |||||||| | ||||||||||| || Sbjct 14764479 TGGTTTGTTTTCAAGGTAACTAAACATAAGGCAGGCGAAATCACGGTGTAATCCCTCATC 14764420 Query 16993 TCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCA 17052 ||| || | ||| || ||| |||||| || |||||| || |||||||| | ||| Sbjct 14764419 TCTTGAAATCAATTCATTGGAATGTGTCAATCCTGGCATCAAACCACGTTTCTTCAGCCA 14764360 Query 17053 AAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAA 17112 |||||| | || || || ||||||||||| ||||| || || | |||||| || || | Sbjct 14764359 AAATATGGAAGCAAATGAACCAGAAAAGAAGATACCTTCAACAGCTGCAAAAGCAATAAC 14764300 Query 17113 TCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTT-- 17170 |||||| | | || || | || | | |||||| | |||| || |||||| Sbjct 14764299 TCGTTCTCCAAAAGTAGCATTCTTATCAGCGATCCATCTTAAAGCCCAATCAGCTTTTTT 14764240 Query 17171 --TGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGT 17228 || | ||| || | || |||| || ||||| | |||| | |||| | || Sbjct 14764239 TCTGATAAATGGAAAC--TC--ATCTAAAGCATTAAAAAGTTTCATTCTTTCGTCATTGT 14764184 Query 17229 CGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTA 17288 | |||||| || ||||| ||| ||||| || ||| || || |||||||| | Sbjct 14764183 CACGTATATAGGTTTCGATAAGTTTTGAATACATCTCACTGTGAATATTTTCCATGGCAA 14764124 Query 17289 TCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 | || || || || ||| | || || || | ||||||||||| Sbjct 14764123 TTTGGAAACCATAGAAGAAACGTGCCTCGGGAATTTGAACTTC 14764081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544726641800