Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq2 179 4e-40
>seq2
Length=16759152
Score = 179 bits (198), Expect = 4e-40
Identities = 427/643 (66%), Gaps = 8/643 (1%)
Strand=Plus/Minus
Query 16693 TTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATT 16752
||| || || || || ||||| ||||| | || ||||| |||| |||||||| || ||
Sbjct 14764719 TTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATATTAACCATAAAATCAAAGGGGTT 14764660
Query 16753 AGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTC 16812
|| | | | | ||| || | ||||| | | || || |||||| ||||
Sbjct 14764659 CTTAACATTATAAAGTTTTGAACAATTAAGTTCCACCAACAAATGGTCAGCTACATATTC 14764600
Query 16813 TATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGT 16872
|||||| |||||||| |||||||||| || | | || |||||||| || ||
Sbjct 14764599 AATATATGTACACATTAAACGTGAGTTCATTCCAATCATATCAACAGGAAGAGCATCTGT 14764540
Query 16873 CAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGA 16932
| || | || ||| |||| || | |||||||| | ||||| || ||
Sbjct 14764539 AAGGTATTCCTTTTCAATATCAACTGCATTTTTAATAATTTCTTTTATACGTTCTTCAGA 14764480
Query 16933 CGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTC 16992
||| | | || ||| | ||||||| || || |||||||| | ||||||||||| ||
Sbjct 14764479 TGGTTTGTTTTCAAGGTAACTAAACATAAGGCAGGCGAAATCACGGTGTAATCCCTCATC 14764420
Query 16993 TCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCA 17052
||| || | ||| || ||| |||||| || |||||| || |||||||| | |||
Sbjct 14764419 TCTTGAAATCAATTCATTGGAATGTGTCAATCCTGGCATCAAACCACGTTTCTTCAGCCA 14764360
Query 17053 AAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAA 17112
|||||| | || || || ||||||||||| ||||| || || | |||||| || || |
Sbjct 14764359 AAATATGGAAGCAAATGAACCAGAAAAGAAGATACCTTCAACAGCTGCAAAAGCAATAAC 14764300
Query 17113 TCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTT-- 17170
|||||| | | || || | || | | |||||| | |||| || ||||||
Sbjct 14764299 TCGTTCTCCAAAAGTAGCATTCTTATCAGCGATCCATCTTAAAGCCCAATCAGCTTTTTT 14764240
Query 17171 --TGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGT 17228
|| | ||| || | || |||| || ||||| | |||| | |||| | ||
Sbjct 14764239 TCTGATAAATGGAAAC--TC--ATCTAAAGCATTAAAAAGTTTCATTCTTTCGTCATTGT 14764184
Query 17229 CGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTA 17288
| |||||| || ||||| ||| ||||| || ||| || || |||||||| |
Sbjct 14764183 CACGTATATAGGTTTCGATAAGTTTTGAATACATCTCACTGTGAATATTTTCCATGGCAA 14764124
Query 17289 TCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331
| || || || || ||| | || || || | |||||||||||
Sbjct 14764123 TTTGGAAACCATAGAAGAAACGTGCCTCGGGAATTTGAACTTC 14764081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517544726641800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |