Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq2 260 1e-64
>seq2
Length=16759152
Score = 260 bits (288), Expect = 1e-64
Identities = 494/724 (68%), Gaps = 5/724 (1%)
Strand=Plus/Plus
Query 101535 AAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTCAT 101594
|||||||||||| |||||||||| |||||| | ||| ||||| | | ||| | |
Sbjct 13735673 AAACAGCCATATCCATTTTAATTGGAGGGTGAAATTCATAATTTTCAAGAACAATATTTT 13735732
Query 101595 CTGCTTTAAAGTCATCAAT---GCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACG 101651
| |||| |||||||| | | || ||| | | |||| | | |||||||||
Sbjct 13735733 TAGAAGTAAAATCATCAATTGTGTTTAAACCATCACCAACAAACTTTATTGTTGGAAATT 13735792
Query 101652 GTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAG 101711
| ||| || || || || | |||||| ||||||||||||| | || || ||||
Sbjct 13735793 GATAAGGTTCACGAGTTAATTGAAGTTTAAGTGCATCAATGTGATTTTTGTATATATGAG 13735852
Query 101712 CATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGC 101771
||||||| ||||| || | ||| || || | ||| | || | ||||||||
Sbjct 13735853 CATCTCCAATAGTGTGAACAAATTCACCTGTAGCTATTCCACAAACTTTTGCAATCATAT 13735912
Query 101772 AAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATC 101831
|||||||||||| || ||||||||||||||| || || | || | ||| | |
Sbjct 13735913 GAGTTAAAAGAGAGTATGAAGCAATGTTAAATGGAACACCAAGACCAACATCCCCACTAC 13735972
Query 101832 TTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGAC 101891
|||||||| || || | | |||||| |||||||||||| ||| |||||
Sbjct 13735973 GTTGATACAAATGGCAACTTAATTCTCCATCTTGAACATAAAATTGAGCTAAAGTATGAC 13736032
Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951
| || ||||| ||||||||| || || || |||||| ||| | | | || ||||
Sbjct 13736033 ATGGAGGCAAAACCATTTTATCAAGATCAGATGGATTCCATGCAGATAAAATAATTCTTC 13736092
Query 101952 TATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTC 102011
| ||| || || ||||| |||||| | || ||||| |||| |||||| |
Sbjct 13736093 TTGAAAAAGGATTGGTCTTTATTTGATCAATTACTTGGGCCAATTGATCAATTCCTTCAC 13736152
Query 102012 CTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCAT 102071
|| |||||||| |||| ||||| ||| ||||| ||||| ||||| ||||| ||||
Sbjct 13736153 CTCTATAATCGGCGTCAACGCCTTTGTATGTAGCTCCAAAATGTCTCCATTGAAAACCAT 13736212
Query 102072 ACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATC 102131
| |||||||| | ||| ||||| | ||| ||| ||| ||||| ||||| | ||| ||
Sbjct 13736213 AAACAGGTCCCAAATCGCCTTCTTGTCTTTCAGTAAATCCAAGATTATCGAGAAACTCTC 13736272
Query 102132 TAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCT-CTTTGCTGTCAGTA 102190
|| ||| || || |||||||| | || || || || | |||||| | |||
Sbjct 13736273 TACTTCCGTTTGCTTCCCAAATTTTAACCCCCCTAGCACTTAATTCCTTTGC-ATTAGTG 13736331
Query 102191 GATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTA 102250
|| || |||||||| | |||||||||| |||| |||||||| | | |||||
Sbjct 13736332 CTACCAGAAATGAACCACAATAACTCTTCAACAATACCTTTCCAAAATGTTTTTTTAGTT 13736391
Query 102251 GTTA 102254
||||
Sbjct 13736392 GTTA 13736395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361250605628885
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |