Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2 260 1e-64 >seq2 Length=16759152 Score = 260 bits (288), Expect = 1e-64 Identities = 494/724 (68%), Gaps = 5/724 (1%) Strand=Plus/Plus Query 101535 AAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTCAT 101594 |||||||||||| |||||||||| |||||| | ||| ||||| | | ||| | | Sbjct 13735673 AAACAGCCATATCCATTTTAATTGGAGGGTGAAATTCATAATTTTCAAGAACAATATTTT 13735732 Query 101595 CTGCTTTAAAGTCATCAAT---GCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACG 101651 | |||| |||||||| | | || ||| | | |||| | | ||||||||| Sbjct 13735733 TAGAAGTAAAATCATCAATTGTGTTTAAACCATCACCAACAAACTTTATTGTTGGAAATT 13735792 Query 101652 GTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAG 101711 | ||| || || || || | |||||| ||||||||||||| | || || |||| Sbjct 13735793 GATAAGGTTCACGAGTTAATTGAAGTTTAAGTGCATCAATGTGATTTTTGTATATATGAG 13735852 Query 101712 CATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGC 101771 ||||||| ||||| || | ||| || || | ||| | || | |||||||| Sbjct 13735853 CATCTCCAATAGTGTGAACAAATTCACCTGTAGCTATTCCACAAACTTTTGCAATCATAT 13735912 Query 101772 AAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATC 101831 |||||||||||| || ||||||||||||||| || || | || | ||| | | Sbjct 13735913 GAGTTAAAAGAGAGTATGAAGCAATGTTAAATGGAACACCAAGACCAACATCCCCACTAC 13735972 Query 101832 TTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGAC 101891 |||||||| || || | | |||||| |||||||||||| ||| ||||| Sbjct 13735973 GTTGATACAAATGGCAACTTAATTCTCCATCTTGAACATAAAATTGAGCTAAAGTATGAC 13736032 Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951 | || ||||| ||||||||| || || || |||||| ||| | | | || |||| Sbjct 13736033 ATGGAGGCAAAACCATTTTATCAAGATCAGATGGATTCCATGCAGATAAAATAATTCTTC 13736092 Query 101952 TATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTC 102011 | ||| || || ||||| |||||| | || ||||| |||| |||||| | Sbjct 13736093 TTGAAAAAGGATTGGTCTTTATTTGATCAATTACTTGGGCCAATTGATCAATTCCTTCAC 13736152 Query 102012 CTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCAT 102071 || |||||||| |||| ||||| ||| ||||| ||||| ||||| ||||| |||| Sbjct 13736153 CTCTATAATCGGCGTCAACGCCTTTGTATGTAGCTCCAAAATGTCTCCATTGAAAACCAT 13736212 Query 102072 ACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATC 102131 | |||||||| | ||| ||||| | ||| ||| ||| ||||| ||||| | ||| || Sbjct 13736213 AAACAGGTCCCAAATCGCCTTCTTGTCTTTCAGTAAATCCAAGATTATCGAGAAACTCTC 13736272 Query 102132 TAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCT-CTTTGCTGTCAGTA 102190 || ||| || || |||||||| | || || || || | |||||| | ||| Sbjct 13736273 TACTTCCGTTTGCTTCCCAAATTTTAACCCCCCTAGCACTTAATTCCTTTGC-ATTAGTG 13736331 Query 102191 GATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTA 102250 || || |||||||| | |||||||||| |||| |||||||| | | ||||| Sbjct 13736332 CTACCAGAAATGAACCACAATAACTCTTCAACAATACCTTTCCAAAATGTTTTTTTAGTT 13736391 Query 102251 GTTA 102254 |||| Sbjct 13736392 GTTA 13736395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250605628885