Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 645 4e-180 seq2 581 4e-161 >seq1 Length=11693564 Score = 645 bits (714), Expect = 4e-180 Identities = 1439/2141 (67%), Gaps = 63/2141 (3%) Strand=Plus/Plus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||| || | || || |||||||| ||||||| || | |||| | | |||| Sbjct 6013174 GCAGGTTTTGTTCTTAAGTAATACATTCCAGTTTTTAATCCACGTTTCCAACTATGAAAA 6013233 Query 52889 TGCAT---ACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 52945 ||||| ||| | ||| ||| || | || | ||| | ||| | ||||| Sbjct 6013234 TGCATTGAACTACAAA---TGGCATATGATGGTTTAGCAACATGAAGATTAAGCGATTGT 6013290 Query 52946 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATT 53005 |||||| || || || || | || |||||||| | || || ||||| | ||| Sbjct 6013291 GATTGATCTATAAAAGCACCACGATCAGCAGCCATCTCAATTATATCTTTTTGAGATATT 6013350 Query 53006 TCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATA 53062 ||||||| ||||||||||| | ||||||| ||||| | | || || || ||| Sbjct 6013351 TCCCAAACAGTTTTATAAAGTTCTTTAATATTAGGTGGAATTTCTTTAATATTTTGGATA 6013410 Query 53063 GATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 53122 |||||| || | || ||| |||| | | ||| ||| |||||| || || || Sbjct 6013411 GATCCATTATTAGCTATTATCTCATTCATTAACTCTTCACTCCATATGTTAAGATCAATT 6013470 Query 53123 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 53182 ||| || |||| ||||| ||||| || | ||| || ||||| || | || | | |||| Sbjct 6013471 AAATCTTTAAGAAGATGAGGATTGACAATTTGGAAATCTCCTGAAAGAACACGTCTAGTG 6013530 Query 53183 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 53242 ||||| ||| ||||| ||||| | ||| ||||||||||| | ||| || |||||||| Sbjct 6013531 TAAATGTTAGAAGTATATGGTTCAATAGATTCATTATTTCCTAGAATCTGTGCAGTTGAA 6013590 Query 53243 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTAT 53300 ||||| ||||| || || | |||||| |||||| | ||| ||||| || || | Sbjct 6013591 GCAGTTGGCATTGGAGCAAGTAATAAAGAATTTCTTACACC--ATGTTTTGCAATGTCTG 6013648 Query 53301 CTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTA 53360 |||||| || |||||||| ||| | ||| ||| || ||| | Sbjct 6013649 CTTTTAAAGTTTCCCAATCCCATAAATCACTTGGTTTGACATTCCACATGTCATATTGAA 6013708 Query 53361 GAATACCGTT----ACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 53416 ||||||| || ||||| | |||| ||||||| || || || || || ||| Sbjct 6013709 GAATACCTTTTGATACTGGAG----ATCCATCATATGTCTCATAAGGACCATCACGTTCA 6013764 Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 53476 |||| |||||| || || ||||| || | ||||| ||||| || ||| |||||| Sbjct 6013765 GCTACTTCACATGAAGCTTCCAATGCTCCATGGTAAATTGTTTCAAAAATCAACTTATTA 6013824 Query 53477 AGATCTTGTGCTTCCAGGCTA--TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 53534 || |||| || | ||| | | ||| |||||| | || ||||| || || |||| Sbjct 6013825 AGTTCTTTAGCGGC-AGGTGAAGTGAAA-GGATAACGCATAAGCATAAATGCATCAGCTA 6013882 Query 53535 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 53594 | || |||||||||||||| || || | |||||| |||| || || ||||| || | Sbjct 6013883 AACCCTGAACACCAATACCAATTGGACGGTGTCTCATATTTGATTTTCTGGCTTCAGGGA 6013942 Query 53595 TAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG---ACAATTACTTTGA--C 53649 |||||||||||| | ||| ||||||||||| | ||| | | |||| || || | Sbjct 6013943 CAGGATAATAATTGACATCAATAATTTTATTCAAATTTTTAGTTAGAATT--TTAGAAAC 6014000 Query 53650 CACATCCTTCAGTTTGAGA---AAATCAAATTGTCCATCTA----TT--ACAAACATGTT 53700 |||| |||||| | ||| || || ||||||| || ||||| | || Sbjct 6014001 AACATGAAGTTGTTTGAAATTAAAAGCAGGTTTACCATCTACAACTTCAACAAATCTATT 6014060 Query 53701 CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 53760 | ||||||||| | |||||||| || || || |||| | | ||||| | || Sbjct 6014061 AAGAGCAATAGATCCTAGATTACATACAGCAACTTCATCTGGTGCACAATATTCAACAAT 6014120 Query 53761 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 53820 ||||| || | ||| ||| || |||||||| | ||||||||||||||| || || Sbjct 6014121 TTCAGTACATAAATTTGAACATTTAATGGTTCCAAGATTTTGTTGATTACTTTTACGATT 6014180 Query 53821 ACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGC 53880 ||| ||| || |||| || | || || || |||||||| || ||| |||| Sbjct 6014181 ACAATGATCTTTGTAAACCATATAAGGTGTTCCGGTTTCAATTTGACTTTCACAAATCTT 6014240 Query 53881 TTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTC--TTTCGTA-TAG 53937 || ||| | || | ||||||||| | ||| | | | |||||| |||| || | | Sbjct 6014241 TTGCCAAATAACTCTGGCCTTTATTT--GTTTTCTGTAACGTTTCTCATTTTCATACTTG 6014298 Query 53938 TGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 53997 || ||| ||| ||||| | || |||||| || || | |||||||||||| | || Sbjct 6014299 TG-ATATAATTCCTCAAAAGCCTCACCCCAAGTATCCTCAAGTCCAGGACATTCGTGGGG 6014357 Query 53998 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 54057 |||||||| ||||| | ||| | || || ||||||||||| | |||||||||||| Sbjct 6014358 GCACATCAAAGACCAATAAGAGTCTTTCTCTACACGTTTCATAAATAAATCAGGAATCCA 6014417 Query 54058 AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 54117 |||| | ||||| ||| | | ||| | ||| || |||||||| || |||||||| Sbjct 6014418 AAGACCATAAAATAAATCACGAGCTCTTTCTTCTTCAGGGCCTGTATTTTTCTTAAGATC 6014477 Query 54118 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCG 54177 | || | | ||| |||| |||||| ||||| | ||||| | | ||||||| | Sbjct 6014478 CAAAAATTCTAAAATGTCAGCATGCCATGGTTCTAGATATATAGCAAATGCTCCAGGTCT 6014537 Query 54178 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 54237 ||| ||||| || || || | || | || || || ||| |||||||||||||||| || Sbjct 6014538 TTTATTTCCCCCTTGGTCAACATAGCGTGCTGTATTGTTAAAAACTCTCAACATTGGTAT 6014597 Query 54238 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 54297 | ||||| |||| |||||| || || ||| | ||| | ||||||||| | Sbjct 6014598 TAATCCATTAGATGTACCATTTGTACCACCAATAAAAGAACCATTAGCACGAATACAATG 6014657 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 || | || || || || || ||| || |||||||| ||| |||| | ||||| Sbjct 6014658 AACATTCAATCCAATACCGCCAGCAGATTTTGAAATTAATGCACATTGTTTAAGAGTATC 6014717 Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 54417 ||| || || || || |||||| ||| | |||| ||||| ||||| || | Sbjct 6014718 ATATATACCTTCAATTGAATCATCAGACATTGTTAGTAAGAAACACGAAGACAGCTGTGG 6014777 Query 54418 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AA 54476 ||| || ||||| ||||||||||| || ||||| || || |||||||| || | ||| | Sbjct 6014778 ACGTCTGGTTCCTGCATTAAATAATGTTGGAGAGGCATGAGTAAACCACTTCTGAGACAT 6014837 Query 54477 GTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 54536 ||| | || || || ||| | || | ||||| ||||||||| ||||| |||| Sbjct 6014838 ATAG-TCATATGTTTCAATAACAGAATTAATATCATCCCCATGAATTCCAACTGCCACAC 6014896 Query 54537 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATT 54596 ||||||| | || || ||||||||| | | || |||||||| | | || || Sbjct 6014897 GCATTAATAAATGTTGTGGTCTTTCAGCAACTTTCCCATTTATTTTTAATAGATATGAAC 6014956 Query 54597 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTG 54656 ||| | || ||||| |||||||| | | ||| |||| | |||| ||| | | Sbjct 6014957 GTTCAAGTGTCTTAAATCCAAAATAAGAGAAATCAAAATCTCTGTTATAAACGATAGCAG 6015016 Query 54657 AGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAAT------ACTTGAAATAA 54710 | || |||||||| || ||| || | | | || | | |||| || | Sbjct 6015017 AATTAAGTTTATCAGCATGTTTTTTGATGATGT---TGTGAGTTTCCTCACTT---ATCA 6015070 Query 54711 TCGGAGAATGTTTCCCATTTTTAGGATTGAC-ATAGTTAAATAAATCCTTCATCACTTCA 54769 | || |||| | | | | || || |||| ||||||| |||| || |||| |||| Sbjct 6015071 TTGGCAAATG-TACTCCTGTTACAGAATGACGATAGTTATATAAGTCACTCATAGCTTCT 6015129 Query 54770 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 54829 ||| ||| ||||||| ||| || | ||| || || || ||||| || ||||| || Sbjct 6015130 GAAAAACTTTTCTTTGTTTGTTTATGCATATTAGAAACAGCAATTCTTGCAGCTAGTATA 6015189 Query 54830 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAAT 54889 |||||||| ||||| ||| || | | || | | ||| || | | | | || ||| Sbjct 6015190 GCATAATCTGGATGAATTGTCGTCATACTTGCAGAAACTTCAGCAGCTAAATTATCTAAT 6015249 Query 54890 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 54930 || || |||| ||| |||||||| | |||||||||||| || Sbjct 6015250 TCAACTGTTGATACACCATTATACAATCCTTGGATAACTTT 6015290 >seq2 Length=16759152 Score = 581 bits (644), Expect = 4e-161 Identities = 1377/2055 (67%), Gaps = 55/2055 (3%) Strand=Plus/Minus Query 52826 GATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAA 52885 || || ||||| || | || ||| |||||||||||||||| || | ||||||| ||| Sbjct 8586477 GAAGCTGGTTTAGTTCTTAAATAATACATTCCCGTTTTTAAGCCACGTTTCCATCCATAA 8586418 Query 52886 AAATGCAT---ACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 52942 |||||||| ||| || | |||| | || | || || | | | | ||| Sbjct 8586417 AAATGCATTGAACTACATA---TACCATAAGTTGGTTTACTTAGATAAAGACTAAGTGAT 8586361 Query 52943 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTT-GTGG 53001 ||| |||||| || || | |||| || ||||||||| || || ||||||| ||| Sbjct 8586360 TGAGATTGATCAATAAAAGGCCCCCGATCAGCAGCCATTCCAATAAT-GTCTTTTTGTGA 8586302 Query 53002 AATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTG 53058 ||||||||| | ||||||||||| | | || |||| ||||| | | |||| || Sbjct 8586301 AATTTCCCATACAGTTTTATAAAGTTCTTGGATGTCTTTTGGAATATCAGGTATATTTTG 8586242 Query 53059 AATAGATCCACCATCTACCATAATCCTATTCT-TGATCTCATCATTCCATAATTTTCTCT 53117 ||| |||||| || | | || || |||| | ||| | |||||||| | || Sbjct 8586241 AATGGATCCATTATTTTCAATTATTTTATTGAGTAATC-CTTCATTCCAAATATTAAGAG 8586183 Query 53118 CGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCC 53177 ||||| | | || ||||| | ||| || |||||||| |||||||| || |||| || Sbjct 8586182 AAATTAAATCACGTAGAAGATGAGTATTTACAACTTGAAAATCTCCAGATAAAACTCGCC 8586123 Query 53178 GAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAG 53237 || || |||||| ||||| ||||| | ||| ||||| ||||| | |||||||| | Sbjct 8586122 TTGTATATATATTAGAAGTATATGGTTCAATAGATTCATTGTTTCCAAGAATTTGAGATG 8586063 Query 53238 TTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTT 53297 | ||||| || ||||| || || | ||||| ||| | |||||| | | | |||| Sbjct 8586062 TAGATGCTGTAGGCATTGGAGCAATTAATAATGAATTGCGAAGACCAAAACGTATAATTT 8586003 Query 53298 TATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTT 53357 | |||| | ||||| | ||| | ||| || | ||| | Sbjct 8586002 CTTGCTTTAAAATATCCCATTCCCATAAATCACTTGGAATAACATTCCACATATCATACT 8585943 Query 53358 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 53416 | ||||| || || || | | ||| | | |||| || || ||| | ||||| Sbjct 8585942 GAAGAATTCCTTTGGATGCTGGAGAATCTTTGA-ATGTTTCATAACATCCATACTTCTTT 8585884 Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 53476 | | |||||| || || | |||||| | |||||| ||||| || || || |||| Sbjct 8585883 GACAATTCACAGGAAGCTTCAAGTGCACCATGATAAATAGTTTCAAAAATTTTTATATTA 8585824 Query 53477 AGATCTTGTGCTTCCAG-GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 53535 ||||||| ||||| | | | | ||| ||||| | | || | ||| | || || | Sbjct 8585823 AGATCTTTAGCTTCTGGTGATGTGAAA-GGATACCTCATAAGCAAAAATGTATCAGCAAG 8585765 Query 53536 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 53595 ||||||||||||||| || || || | ||| | ||| || | ||||||| | Sbjct 8585764 TCCTTGAACACCAATTCCAATTGGACGATGCTTAAGATTTGATAAACGAGCTTCTTCTAG 8585705 Query 53596 AGGATAATAATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCAC 53652 |||||| |||||||||| ||||||||||| | |||| | |||||| |||| ||| Sbjct 8585704 TGGATAAAAATTAATATCAATAATTTTATTTAAATTTCTTGTTACAATT--TTTG-TCAC 8585648 Query 53653 ATCCTTCAGTTTGAGAAAATCAAA---------TTGTCCATCTAT---TACAAACATGTT 53700 ||| | || | ||| ||||| || | | | ||| |||||||| || Sbjct 8585647 ATCATGAAGCATTTTAAAGTCAAATGTAGGTTTTTTTTCTTTTATAACAACAAACATATT 8585588 Query 53701 CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 53760 | |||||| ||||| | ||||||||| || || || | | | |||||| || || Sbjct 8585587 AAGTGCAATTGATGCTAAATTACAAACAGCAACTTCGCTTGGAGAACAATATTGAATAAT 8585528 Query 53761 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 53820 ||||| || ||||| ||| | || ||||||||||||||||||||||| || || Sbjct 8585527 TTCAGTACATAGATTTGAACATCTAATCGTTCCTAAATTTTGTTGATTACTTTTACGATT 8585468 Query 53821 ACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGC 53880 ||| ||| ||||||| || |||| |||||||||||||||| ||||| ||| Sbjct 8585467 ACAATGATCTTTATAAACCATATATGGAATACCAGTTTCAATCTGAGATTCACAAATTTT 8585408 Query 53881 TTTCCAGACGACACGAGCCTTTATTATAGATTT--GTATCTCTTTTCTCTTTCGTATAGT 53938 | ||| || | | ||| ||||| | | ||| | | || ||||| |||| ||| Sbjct 8585407 CTGCCAAACAAATCTAGCTTTTAT--TTGCTTTCGGAACCTTTTTTCATTTTCATATTTA 8585350 Query 53939 GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 53998 |||| | | ||||| | || || || ||| || | || |||||||||| ||| Sbjct 8585349 ATATAAAGTTCATCAAATTTATCACCAAAACAATTATCAAGACCTGGACATTCATAAGGA 8585290 Query 53999 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 54058 ||||| || ||||| | || | | || ||||||||||| | ||| |||| |||| Sbjct 8585289 CACATTAATGACCAATGAAGATCCTGTTCAACACGTTTCATAAATAAATCTGGAACCCAA 8585230 Query 54059 AGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 54118 || | ||||| ||| | | ||| ||| || ||||| || ||| | | ||| Sbjct 8585229 AGTCCATAAAATAAATCACGAGCTCTTGCTTCTTCTGGACCTGTGTTTTTTCTTAAATCT 8585170 Query 54119 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGT 54178 | || |||| ||||||| |||||| ||||||||||| || | | | ||||| ||| Sbjct 8585169 AAAAATTCCATTATATCAGCATGCCATGGTTCCAAGTAGATTGCAAATGCCCCAGGTCGT 8585110 Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238 || || || |||||||| | || | ||| || |||||||||| | |||||||| || Sbjct 8585109 TTATTACCACCCTGATCAACATAACGAGCAGTACTATTATAAACACGTAACATTGGTATT 8585050 Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 54298 | |||||| |||| ||||| || || | ||| | ||||| |||||||| | Sbjct 8585049 AAACCATTTGATGATCCATTTGTTCCTGCAATAAATGTTCCAGAAGCACGAATTCCAGAG 8584990 Query 54299 ATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 54358 || || || || || || || ||| || |||| || ||| |||| || || ||| Sbjct 8584989 ATACTTAATCCAATTCCTCCGGCAGATTTTGAAATTATAGCACATTGTTTCAAAGTGTCA 8584930 Query 54359 TAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTG 54417 || || || || ||| |||||| || |||||| || |||||| || | ||| Sbjct 8584929 TAAATTCCTTCAATAGAATCATCAGCCATTGTTAA-TAAAAAACATGACGATAATTGTGC 8584871 Query 54418 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 54477 |||| |||||| ||||||||||| || || ||||| || |||||||||||| ||| | Sbjct 8584870 ACGAGAAGTTCCTGCATTAAATAATGTTGGGGAAGCATGAATAAACCATTTTTTAGACA- 8584812 Query 54478 TAGAT-TGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 54536 || || || ||||| ||||| || | ||||| | ||||||| ||| || || | Sbjct 8584811 TATATAAATATGTCTCAATAGCAGAAGCAATATCTTCTCTATGAATTGCTATAGCTACTC 8584752 Query 54537 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATT 54596 |||||||||| | ||||||||||| || || || | || ||| | | || || ||| Sbjct 8584751 GCATTAACATATATTGAGGTCTTTCCACAATTTTATCATTGATTCTTAATAAATATGATC 8584692 Query 54597 TTTCCAAAGTTTTAAAACCAAAATA-GTTGTATGAAAAGTCTCGTTCGTAAATAATAACT 54655 ||| | ||| |||| |||||||| || || |||| ||| ||| | ||||||| Sbjct 8584691 GTTCTAGTGTTCTAAATCCAAAATATGTAAAATTAAAA-TCTTTTTCATTTTCAATAACT 8584633 Query 54656 GAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT--GAAATAATCG 54713 |||| ||||| || ||| | || || | ||| || | ||| | || | | Sbjct 8584632 GAGTCAAGTTTTATTGAATGTTTCTGAA-TAATTTCAT-TTATTTCTTTAGTTATCAAAG 8584575 Query 54714 GAGAATGTTTCCCATT---TTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCAC 54770 || |||||| || | ||| | || ||| ||| ||||||| ||||| |||||| Sbjct 8584574 GACAATGTTCACCTGTCACATTATGTTT---ATAATTATATAAATCATTCATAACTTCAG 8584518 Query 54771 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGG 54830 |||| ||||| |||| ||| || | ||||| | ||| || | ||| |||| | Sbjct 8584517 AAAATTTATTTTTAGTTTGTTTATGCAAATTTGTAATGGCAATACGAGCTGCTAATTTTT 8584458 Query 54831 CATAATCCGGATGTT 54845 ||||||| ||||||| Sbjct 8584457 CATAATCAGGATGTT 8584443 Score = 255 bits (282), Expect = 7e-63 Identities = 524/772 (68%), Gaps = 23/772 (3%) Strand=Plus/Minus Query 23820 TCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 23879 || ||| ||||||||| || | ||| || |||||| || ||| || || ||||| Sbjct 14764763 TCATCTGTAGACATAACACCGAATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTT 14764704 Query 23880 GTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATT 23939 ||||| || || | ||| ||||| |||| ||||| | || || |||||||||| | | Sbjct 14764703 GTTTTTCCCTCAATTGAAATATTAACCATAAAATCAAAGGGGTTCTTAACATTATAAAGT 14764644 Query 23940 CTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATC 23999 || | | | ||| | ||| || || ||| | || |||||||| || | Sbjct 14764643 TTTGAACAATTAAGTTCCACCAACAAATGGTCAGCTACATATTCAATATATGTA--CA-C 14764587 Query 24000 ATTTCAC---AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGT 24056 ||| || | |||||||| || | | ||| |||||||| | ||||| |||| | | Sbjct 14764586 ATTAAACGTGAGTTCATTCCAATCATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTT 14764527 Query 24057 TCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGT--GGATACA 24114 |||||| || || | | | ||||| | ||| ||||||| ||| | | || Sbjct 14764526 TCAATATCAACTGCATTTTTAATAATTTCTTTTATACGTTCTTCAGATGGTTTGTTTTCA 14764467 Query 24115 A--TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAAT 24172 | ||| | |||||| | || |||||||| | ||||| ||||| ||||| ||| Sbjct 14764466 AGGTAACT----AAACATAAGGCAGGCGAAATCACGGTGTAATCCCTCATCTCTTGAAAT 14764411 Query 24173 TAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 24232 ||||| |||||| || | ||| ||||| | ||||| || || |||||||||||||| Sbjct 14764410 CAATTCATTGGAATGTGTCAATCCTGGCATCAAACCACGTTTCTTCAGCCAAAATATGGA 14764351 Query 24233 CGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC 24292 |||||||| ||||||||||| || ||||| || || ||||| ||||||| || |||||| Sbjct 14764350 AGCAAATGAACCAGAAAAGAAGATACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCC 14764291 Query 24293 ATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACA 24349 | || || | ||| ||||| || ||||||||| || || ||| | | | | Sbjct 14764290 AAAAGTAGCATTCTTATCAGCGATCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAA 14764231 Query 24350 AGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGT 24409 || | |||| ||||||||| || | || |||| | | | || | ||| || Sbjct 14764230 TGGAAACTCATCTAAAGCATTAAAAAGTTTCATTCTTTCGTCATTGTCACGTATATAGGT 14764171 Query 24410 ATCAATCAAAAGACT---ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCC 24466 || || ||| | |||||| || ||||| ||||| ||||| ||||| || || Sbjct 14764170 TTCGAT---AAGTTTTGAATACATCTCACTGTGAATATTTTCCATGGCAATTTGGAAACC 14764114 Query 24467 GTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTC 24526 ||||| | | ||||||| ||| || |||||| || |||||| || | ||||| || Sbjct 14764113 ATAGAAGAAACGTGCCTCGGGAATTTGAACTTCTTTAGAAAATCTCTCGACCAAATTCTC 14764054 Query 24527 ATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 ||| || || || ||| || ||||| || || || ||| || |||||| Sbjct 14764053 ATTAACAATACCATCAGAAGCGGCAAAGAAAGCTAAGACACGTGAAATAAAA 14764002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720598094800