Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 >seq2 Length=16759152 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || || || || || || ||||| ||| ||||| | Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || ||||||| ||||| ||||| | || ||||||| Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || |||||||| |||||| | |||| | | || |||||| Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || |||||||||||||| |||| | || | || ||||| Sbjct 10682238 ATCCAAAAAGAATCTACTCTTCATTTGGTTCTTCGTCTTCGTGGAGG 10682284 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || || || || ||||| ||||| ||| ||||| | Sbjct 10682286 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10682345 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| ||| ||| ||||| ||||| | || ||||||| Sbjct 10682346 GACACTATTGACAACGTTAAGTCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 10682405 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || |||||||| |||||| | |||| | | || |||||| Sbjct 10682406 CAAAGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682465 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || ||||| || ||||||||| | || | || | || ||||| Sbjct 10682466 ATCCAAAAGGAGTCAACTCTTCACTTAGTTCTTCGTCTTCGTGGAGG 10682512 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || || || || || || ||||| ||| ||||| | Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || |||| ||| ||| || || ||||| | || ||||||| Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 10683089 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || |||||||| |||||| | |||| | | || || ||| Sbjct 10683090 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10683149 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||| |||||||| |||| | || | || ||||| Sbjct 10683150 ATCCAAAAGGAATCAACTCTTCATTTGGTTCTTCGTCTTCGTGGAGG 10683196 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || ||||| || || ||||| || ||| ||||| | Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || |||| ||| ||| || |||||||| | || ||||||| Sbjct 10682574 GACACCATCGACAATGTTAAATCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 10682633 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || ||||| || |||||||| |||||| | |||| | | || || ||| Sbjct 10682634 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAAT 10682693 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||| ||||| || |||| | || | || ||||| Sbjct 10682694 ATCCAAAAGGAATCAACTCTCCATTTGGTTCTTCGTCTTCGTGGAGG 10682740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335295253425