Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq2 206 2e-48 >seq2 Length=16759152 Score = 206 bits (228), Expect = 2e-48 Identities = 483/724 (67%), Gaps = 5/724 (1%) Strand=Plus/Plus Query 96899 AAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCAT 96958 |||||||||| |||||| || ||||| | | ||| ||||| |||| ||| | | Sbjct 13735673 AAACAGCCATATCCATTTTAATTGGAGGGTGAAATTCATAATTTTCAAGAACAATATTTT 13735732 Query 96959 TTGCTTTAAAATCATCAATAGA--TGCAATCTTT-CTGGCAAACTTTAGTGTTGGGAAAG 97015 | | ||||||||||||| | | || | | | ||||||||| |||||| || Sbjct 13735733 TAGAAGTAAAATCATCAATTGTGTTTAAACCATCACCAACAAACTTTATTGTTGGAAATT 13735792 Query 97016 GCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAG 97075 | || || || | || | | || |||||||||||||| || || |||| Sbjct 13735793 GATAAGGTTCACGAGTTAATTGAAGTTTAAGTGCATCAATGTGATTTTTGTATATATGAG 13735852 Query 97076 CATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATAC 97135 ||||||| | |||||||| |||||| || | | ||| || || | || |||||| Sbjct 13735853 CATCTCCAATAGTGTGAACAAATTCACCTGTAGCTATTCCACAAACTTTTGCAATCATAT 13735912 Query 97136 AAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATC 97195 |||||| ||||| || |||||||||||| || || || || || | ||| | | Sbjct 13735913 GAGTTAAAAGAGAGTATGAAGCAATGTTAAATGGAACACCAAGACCAACATCCCCACTAC 13735972 Query 97196 TTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGAC 97255 |||||| || || || | | |||||| |||||||| ||| || ||||| Sbjct 13735973 GTTGATACAAATGGCAACTTAATTCTCCATCTTGAACATAAAATTGAGCTAAAGTATGAC 13736032 Query 97256 AGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTC 97315 | || ||||| ||||||| || ||| | |||||| ||| | | | ||||||| Sbjct 13736033 ATGGAGGCAAAACCATTTTATCAAGATCAGATGGATTCCATGCAGATAAAATAATTCTTC 13736092 Query 97316 TATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTC 97375 | || || || | ||| || ||||| || |||||||||| ||||| | Sbjct 13736093 TTGAAAAAGGATTGGTCTTTATTTGATCAATTACTTGGGCCAATTGATCAATTCCTTCAC 13736152 Query 97376 CACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCAT 97435 | | ||||| | | || |||| ||| ||||||||||| |||||||| || |||| Sbjct 13736153 CTCTATAATCGGCGTCAACGCCTTTGTATGTAGCTCCAAAATGTCTCCATTGAAAACCAT 13736212 Query 97436 AAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACC 97495 |||||||||| | || ||||||| ||| ||| || ||||| ||||| | | | | Sbjct 13736213 AAACAGGTCCCAAATCGCCTTCTTGTCTTTCAGTAAATCCAAGATTATCGAGAAACTCTC 13736272 Query 97496 TAGATCCATTTGCATCCCAAATGTGCACACCAGATGC-TGCAAGCTCTTTGCTGTCAGTA 97554 || ||| ||||| |||||||| | || || || || |||||| | ||| Sbjct 13736273 TACTTCCGTTTGCTTCCCAAATTTTAACCCCCCTAGCACTTAATTCCTTTGC-ATTAGTG 13736331 Query 97555 GATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTT 97614 || || |||||||| || ||||| |||| |||| |||||||| | | |||||| Sbjct 13736332 CTACCAGAAATGAACCACAATAACTCTTCAACAATACCTTTCCAAAATGTTTTTTTAGTT 13736391 Query 97615 GTTA 97618 |||| Sbjct 13736392 GTTA 13736395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346783429431950