Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq2 206 2e-48
>seq2
Length=16759152
Score = 206 bits (228), Expect = 2e-48
Identities = 483/724 (67%), Gaps = 5/724 (1%)
Strand=Plus/Plus
Query 96899 AAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCAT 96958
|||||||||| |||||| || ||||| | | ||| ||||| |||| ||| | |
Sbjct 13735673 AAACAGCCATATCCATTTTAATTGGAGGGTGAAATTCATAATTTTCAAGAACAATATTTT 13735732
Query 96959 TTGCTTTAAAATCATCAATAGA--TGCAATCTTT-CTGGCAAACTTTAGTGTTGGGAAAG 97015
| | ||||||||||||| | | || | | | ||||||||| |||||| ||
Sbjct 13735733 TAGAAGTAAAATCATCAATTGTGTTTAAACCATCACCAACAAACTTTATTGTTGGAAATT 13735792
Query 97016 GCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAG 97075
| || || || | || | | || |||||||||||||| || || ||||
Sbjct 13735793 GATAAGGTTCACGAGTTAATTGAAGTTTAAGTGCATCAATGTGATTTTTGTATATATGAG 13735852
Query 97076 CATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATAC 97135
||||||| | |||||||| |||||| || | | ||| || || | || ||||||
Sbjct 13735853 CATCTCCAATAGTGTGAACAAATTCACCTGTAGCTATTCCACAAACTTTTGCAATCATAT 13735912
Query 97136 AAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATC 97195
|||||| ||||| || |||||||||||| || || || || || | ||| | |
Sbjct 13735913 GAGTTAAAAGAGAGTATGAAGCAATGTTAAATGGAACACCAAGACCAACATCCCCACTAC 13735972
Query 97196 TTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGAC 97255
|||||| || || || | | |||||| |||||||| ||| || |||||
Sbjct 13735973 GTTGATACAAATGGCAACTTAATTCTCCATCTTGAACATAAAATTGAGCTAAAGTATGAC 13736032
Query 97256 AGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTC 97315
| || ||||| ||||||| || ||| | |||||| ||| | | | |||||||
Sbjct 13736033 ATGGAGGCAAAACCATTTTATCAAGATCAGATGGATTCCATGCAGATAAAATAATTCTTC 13736092
Query 97316 TATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTC 97375
| || || || | ||| || ||||| || |||||||||| ||||| |
Sbjct 13736093 TTGAAAAAGGATTGGTCTTTATTTGATCAATTACTTGGGCCAATTGATCAATTCCTTCAC 13736152
Query 97376 CACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCAT 97435
| | ||||| | | || |||| ||| ||||||||||| |||||||| || ||||
Sbjct 13736153 CTCTATAATCGGCGTCAACGCCTTTGTATGTAGCTCCAAAATGTCTCCATTGAAAACCAT 13736212
Query 97436 AAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACC 97495
|||||||||| | || ||||||| ||| ||| || ||||| ||||| | | | |
Sbjct 13736213 AAACAGGTCCCAAATCGCCTTCTTGTCTTTCAGTAAATCCAAGATTATCGAGAAACTCTC 13736272
Query 97496 TAGATCCATTTGCATCCCAAATGTGCACACCAGATGC-TGCAAGCTCTTTGCTGTCAGTA 97554
|| ||| ||||| |||||||| | || || || || |||||| | |||
Sbjct 13736273 TACTTCCGTTTGCTTCCCAAATTTTAACCCCCCTAGCACTTAATTCCTTTGC-ATTAGTG 13736331
Query 97555 GATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTT 97614
|| || |||||||| || ||||| |||| |||| |||||||| | | ||||||
Sbjct 13736332 CTACCAGAAATGAACCACAATAACTCTTCAACAATACCTTTCCAAAATGTTTTTTTAGTT 13736391
Query 97615 GTTA 97618
||||
Sbjct 13736392 GTTA 13736395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346783429431950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |