Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2 203 5e-47 >seq2 Length=16759152 Score = 203 bits (224), Expect = 5e-47 Identities = 425/631 (67%), Gaps = 7/631 (1%) Strand=Plus/Plus Query 205327 TTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGA 205386 |||| | |||||||| | | ||| ||| |||||| ||| | | ||| ||| ||| Sbjct 13735777 TTTATTGTTGGAAATTGATAAGGTTCACGAGTTAATTGAAGTTTAAGTGCATCAATGTGA 13735836 Query 205387 TTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTT 205446 || |||||||| |||| |||||| | |||| ||||||| || || || Sbjct 13735837 TTTTTGTATATATGAGCATCTCCAATAGTGTGAACAAATTCACCTGTAGCTA--TTCCAC 13735894 Query 205447 AAA--TGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTA 205504 ||| | ||||||||||| ||| || | | || ||||| |||||||| ||||| | Sbjct 13735895 AAACTTTTGCAATCATATGAGTTAAAAGAGAGTATGAAGCAATGTTAAATGGAACACCAA 13735954 Query 205505 AACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACAT 205564 ||| | ||| | | |||||||| || || | | | | || | || ||| Sbjct 13735955 GACCAACATCCCCACTACGTTGATACAAATGGCAACTTAATTCTCCATCTTGAA---CAT 13736011 Query 205565 GAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCC 205624 |||||| | ||| |||||| || || | |||||| || |||| ||| ||||||| Sbjct 13736012 AAAATTGAGCTAAAGTATGACATGGAGGCAAAACCATTTTATCAAGATCAGATGGATTCC 13736071 Query 205625 AGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGTG 205684 | || | ||| || || |||| || ||| || | ||||||| || || | || | Sbjct 13736072 ATGCAGATAAAATAATTCTTCTTGAAAAAGGATTGGTCTTTATTTGATCAATTACTTGGG 13736131 Query 205685 TTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAA 205744 |||||||||| ||||| | | |||||| | || | | | ||| |||| |||| Sbjct 13736132 CCAATTGATCAATTCCTTCACCTCTATAATCGGCGTCAACGCCTTTGTATGTAGCTCCAA 13736191 Query 205745 AATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAAC 205804 |||| | |||||||||||||||||| || || ||||| ||||||| ||| ||| |||| | Sbjct 13736192 AATGTCTCCATTGAAAACCATAAACAGGTCCCAAATCGCCTTCTTGTCTTTCAGTAAATC 13736251 Query 205805 CACGtttttttatatattttaatgatccattttcatcccaaatatggattcctttatttt 205864 || | || | | | | | | ||| ||| | |||||||| | | || || Sbjct 13736252 CAAGATTATCGAGAAACTCTCTACTTCCGTTTGCTTCCCAAATTTTAACCCCCCTAGCAC 13736311 Query 205865 ttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTC 205924 ||| |||| |||||| ||||| || ||||| ||||| ||||||||||| ||| Sbjct 13736312 TTAATTCCTTTGCATTAGTGCTACCAGAAATGAACCACAATAACTCTTCAACAATACCTT 13736371 Query 205925 TCCAAAACATTGATTTTGTTGTAAATAATGG 205955 ||||||| || ||| ||||| | ||| || Sbjct 13736372 TCCAAAATGTTTTTTTAGTTGTTATTAAGGG 13736402 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| ||||||| ||||| || ||| | || ||||| || | Sbjct 10683198 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACCATTACTCTTGAAGTTGAACCATCT 10683257 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | ||| || ||||||||||| ||||| || || || |||||| Sbjct 10683258 GACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAAGGAATCCCTCCAGATCAA 10683317 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| ||||| ||| | |||||| | ||||| | ||||| || Sbjct 10683318 CAAAGATTAATTTTTGCCGGAAAGCAACTTGAGGATGGAAGAACACTTTCTGATTACAAC 10683377 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||||||||| |||||| | ||||||||| | ||| | || || ||| Sbjct 10683378 ATTCAAAAAGAGTCAACTCTTCATTTGGTTCTCCGTCTTCGTGGAGGT 10683425 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| ||||||| || ||||| ||| | || | ||| || Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| |||||||||||||| ||||| || ||||| |||||| Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| ||||||||| | || ||| | |||| | || || ||| Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| | ||||||||| | ||| | || || ||||| Sbjct 10682238 ATCCAAAAAGAATCTACTCTTCATTTGGTTCTTCGTCTTCGTGGAGGTAT 10682287 Score = 134 bits (148), Expect = 2e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| ||||||| || ||||| ||| | || | ||| || Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| ||||| || || |||||||| || ||||| || || || ||||| Sbjct 10683030 GACACCATCGACAATGTTAAATCA-AAGATTCAAGACAAGGAAGGAATTCCTCCAGATCA 10683088 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| ||||||||| | || ||| | |||| | || ||||| Sbjct 10683089 ACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAA 10683148 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| ||||||||| | ||||||||| | ||| | || || ||||| Sbjct 10683149 TATCCAAAAGGAATCAACTCTTCATTTGGTTCTTCGTCTTCGTGGAGGTAT 10683199 Score = 132 bits (146), Expect = 7e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| || | ||||| | |||||||||||||| ||| | ||| | || | Sbjct 10681599 ACCATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCCT 10681658 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || ||| ||| | || || |||||||| |||||||| || || || ||| Sbjct 10681659 TCCGACACTATTGACAATGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCTCCAGAT 10681718 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 ||||| || | |||||||| ||||||||| | || ||| | |||| | || ||| Sbjct 10681719 CAACAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTAT 10681778 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| ||||||||| | ||||||||| | ||| | || || ||||| Sbjct 10681779 AATATCCAAAAGGAATCAACTCTCCATTTGGTTCTTCGTCTTCGTGGAGGTAT 10681831 Score = 132 bits (146), Expect = 7e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| ||||||| |||||||| ||| | || ||||| || | Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | ||| |||||||||||||| ||||| || || || || ||| Sbjct 10681890 GACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAA 10681949 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| ||||||||| | || ||| | | || | ||||| || Sbjct 10681950 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAAC 10682009 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||||| |||||| | || || ||| | ||| | || || ||||| ||| || Sbjct 10682010 ATTCAAAAAGAGTCAACTCTTCACTTAGTTCTTCGTCTTCGTGGAGGTATGCAAATTT 10682067 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| ||||||| |||||||| ||| | || ||||| || | Sbjct 10682286 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10682345 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || |||| || || ||||||||||| ||||| || || || ||||| Sbjct 10682346 GACACTATTGACAACGTTAAGTCA-AAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 10682404 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| ||||||||| | || ||| | |||| | || || || Sbjct 10682405 ACAAAGATTAATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAA 10682464 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| || |||||| | || || ||| | ||| | || || ||||| Sbjct 10682465 TATCCAAAAGGAGTCAACTCTTCACTTAGTTCTTCGTCTTCGTGGAGGTAT 10682515 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || || || || ||| | ||| | ||| || Sbjct 10682514 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTAGAACCATCC 10682573 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| ||||| || || |||||||| |||||||| || || || ||||| Sbjct 10682574 GACACCATCGACAATGTTAAATCA-AAGATTCAAGACAAAGAAGGAATTCCTCCAGATCA 10682632 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||| ||||||||| | || ||| | |||| | || ||||| Sbjct 10682633 ACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAA 10682692 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| ||||||||| | ||||||||| | ||| | || || ||||| Sbjct 10682693 TATCCAAAAGGAATCAACTCTCCATTTGGTTCTTCGTCTTCGTGGAGGTAT 10682743 Score = 109 bits (120), Expect = 8e-19 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || |||| || ||||| |||||| | ||| ||||||| Sbjct 14587457 AATGCAAATTTTTGTTAAAACTTTAACTGGAAAAACAATAACTCTTGAGGTTGAAGCCTC 14587516 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| || |||| ||||||| || ||||| || ||||||||||| ||||| || | Sbjct 14587517 AGATACAGTTGATAATGTTAAAACT-AAGATTCATGAAAAAGAAGGTATCCCACCAGACC 14587575 Query 124657 AACAAAGGCTTATTTTTGCAGG 124678 ||||| ||||||| ||||| || Sbjct 14587576 AACAACGGCTTATATTTGCCGG 14587597 Score = 86.0 bits (94), Expect = 9e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 124676 AGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735 |||||||||| | |||||| | ||||| | |||||||||||||||||||||||| || Sbjct 14587645 AGGAAAACAACTTGAGGATGGAAGAACACTTTCAGATTATAATATTCAAAAAGAATCTAC 14587704 Query 124736 TTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 | | ||||| ||| | |||||||| || || Sbjct 14587705 TCTTCATTTAGTTCTTCGTTTACGTGGAGG 14587734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454725168000