Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq2 93.3 4e-14
>seq2
Length=16759152
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|| ||||| | || ||||||||||||||||||||||| | ||| | ||| ||
Sbjct 10682038 ACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCA 10681979
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| ||||||||||| | || | | || || || ||||| || || ||||| ||| |
Sbjct 10681978 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGA 10681919
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708
|||||| ||| || | |||| ||||| | || | || || || | || | |||||
Sbjct 10681918 ATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGT-TCAACTTCAAGAGTAATAGTTTT 10681860
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || | || || ||||||||||||||
Sbjct 10681859 ACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| |||| || || || ||||| || || || || | ||| | ||| ||
Sbjct 10682722 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10682663
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| ||||||||||| | || | | || ||||| ||||| || || || |||||| |
Sbjct 10682662 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10682603
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| ||| |||||| | |||| |||||| | || | || ||||||| || | || ||
Sbjct 10682602 ATCTTTGATTTAACATTGTCGATGGTGTCGGATGGT-TCTACCTCGAGAGTGATGGTCTT 10682544
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| ||| || || |||||||||||
Sbjct 10682543 TCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514
Score = 82.4 bits (90), Expect = 7e-11
Identities = 148/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587
||||| || | || ||||||||||||||||||||||| | |||| | | |||||
Sbjct 10683406 ACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAG--AAAGTGTTCTTCCATCCT 10683349
Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647
| || || ||||| || | || | | || ||||| ||||| || || ||||| |||
Sbjct 10683348 CAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTT 10683289
Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTT 118706
||| ||| ||| || | || | ||||| | || | || || || | || | |||
Sbjct 10683288 GAATCTTTGATTTGACATTATCAATAGTGTCAGATGGT-TCAACTTCAAGAGTAATGGTT 10683230
Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || | || || ||||||||||||||
Sbjct 10683229 TTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433829686213420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |