Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 4e-14 >seq2 Length=16759152 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | || ||||||||||||||||||||||| | ||| | ||| || Sbjct 10682038 ACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCA 10681979 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||||||||| | || | | || || || ||||| || || ||||| ||| | Sbjct 10681978 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGA 10681919 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||| || | |||| ||||| | || | || || || | || | ||||| Sbjct 10681918 ATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGT-TCAACTTCAAGAGTAATAGTTTT 10681860 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || || |||||||||||||| Sbjct 10681859 ACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| || || || ||||| || || || || | ||| | ||| || Sbjct 10682722 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10682663 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||||||||| | || | | || ||||| ||||| || || || |||||| | Sbjct 10682662 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10682603 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| |||||| | |||| |||||| | || | || ||||||| || | || || Sbjct 10682602 ATCTTTGATTTAACATTGTCGATGGTGTCGGATGGT-TCTACCTCGAGAGTGATGGTCTT 10682544 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || || ||||||||||| Sbjct 10682543 TCCAGTCAAAGTCTTAACGAAAATCTGCAT 10682514 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587 ||||| || | || ||||||||||||||||||||||| | |||| | | ||||| Sbjct 10683406 ACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAG--AAAGTGTTCTTCCATCCT 10683349 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | || || ||||| || | || | | || ||||| ||||| || || ||||| ||| Sbjct 10683348 CAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTT 10683289 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTT 118706 ||| ||| ||| || | || | ||||| | || | || || || | || | ||| Sbjct 10683288 GAATCTTTGATTTGACATTATCAATAGTGTCAGATGGT-TCAACTTCAAGAGTAATGGTT 10683230 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || | || || |||||||||||||| Sbjct 10683229 TTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829686213420