Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq1 105 1e-17
>seq1
Length=11693564
Score = 105 bits (116), Expect = 1e-17
Identities = 195/283 (69%), Gaps = 5/283 (2%)
Strand=Plus/Minus
Query 135654 AGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTAGC 135713
||| ||| | | |||||| || | || | || || || || |||||||| | ||
Sbjct 2721772 AGAGCTTCGTAAATGGGCTGACGCATTATTAATTGCTCCATTGGATGCAAATACTATGGC 2721713
Query 135714 AAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATAC 135773
|||||||| ||||| || || ||||||||||| || ||| |||| || || |||||||
Sbjct 2721712 TAAAATAGCAAATGGAATTTGTGATAATTTACTTACATCTCTTGTCAGGGCATGGGATAA 2721653
Query 135774 AAACAAACCACTCATTTTCTG-TCCTGCAATGAATACTCTTATGTGGGAACATCCTATTA 135832
|| || ||| | ||||| || ||| ||||||||||| ||||||||| | | |
Sbjct 2721652 TAATAAGCCATT-ATTTTTTGCTCCAGCAATGAATACATGTATGTGGGAGAGTATGTTAA 2721594
Query 135833 CAGAAAAACATATAGATACGTTAAAATAT---ATGGGTTTCATAGAAATAGAATGCATAG 135889
| | | ||||| || | |||||| || ||| | | | |||||| | |||
Sbjct 2721593 CTGTACAACATTTAAAAGTATTAAAAGATTTAATGAGATGGAAAGAAATTCCACCAATAC 2721534
Query 135890 aaaaaaaaCTAGCATGTGGAGACGTAGGAAATGGTGCTATGGC 135932
||||| || || ||||| || |||| |||| ||||||||
Sbjct 2721533 AAAAAGAATTAATGTGTGGTGATAAAGGATATGGAGCTATGGC 2721491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923195242105400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |