Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1 105 1e-17 >seq1 Length=11693564 Score = 105 bits (116), Expect = 1e-17 Identities = 195/283 (69%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 135654 AGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTAGC 135713 ||| ||| | | |||||| || | || | || || || || |||||||| | || Sbjct 2721772 AGAGCTTCGTAAATGGGCTGACGCATTATTAATTGCTCCATTGGATGCAAATACTATGGC 2721713 Query 135714 AAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATAC 135773 |||||||| ||||| || || ||||||||||| || ||| |||| || || ||||||| Sbjct 2721712 TAAAATAGCAAATGGAATTTGTGATAATTTACTTACATCTCTTGTCAGGGCATGGGATAA 2721653 Query 135774 AAACAAACCACTCATTTTCTG-TCCTGCAATGAATACTCTTATGTGGGAACATCCTATTA 135832 || || ||| | ||||| || ||| ||||||||||| ||||||||| | | | Sbjct 2721652 TAATAAGCCATT-ATTTTTTGCTCCAGCAATGAATACATGTATGTGGGAGAGTATGTTAA 2721594 Query 135833 CAGAAAAACATATAGATACGTTAAAATAT---ATGGGTTTCATAGAAATAGAATGCATAG 135889 | | | ||||| || | |||||| || ||| | | | |||||| | ||| Sbjct 2721593 CTGTACAACATTTAAAAGTATTAAAAGATTTAATGAGATGGAAAGAAATTCCACCAATAC 2721534 Query 135890 aaaaaaaaCTAGCATGTGGAGACGTAGGAAATGGTGCTATGGC 135932 ||||| || || ||||| || |||| |||| |||||||| Sbjct 2721533 AAAAAGAATTAATGTGTGGTGATAAAGGATATGGAGCTATGGC 2721491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923195242105400