Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2 132 7e-26 seq1 123 4e-23 >seq2 Length=16759152 Score = 132 bits (146), Expect = 7e-26 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||| ||||| || |||||||| || ||||||||||| | ||| || Sbjct 10681810 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10681751 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||||||||||||||| ||||| || ||||| ||||||||||||||||| ||||| Sbjct 10681750 AGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10681691 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||| || ||| ||||| || || ||||| ||||| Sbjct 10681690 ATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTTG 10681631 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || |||| ||| |||||||| Sbjct 10681630 CCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602 Score = 129 bits (142), Expect = 9e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||| ||||| || |||||||| || ||||||||||| | ||| || Sbjct 10682722 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10682663 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||| Sbjct 10682662 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG 10682604 Score = 120 bits (132), Expect = 5e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | |||||||||||| ||||| || || || |||||||| | ||| || Sbjct 10682266 ACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682207 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||||||| ||||| ||||||||||| ||||| || ||||||||||| |||||||| Sbjct 10682206 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTG 10682148 Score = 120 bits (132), Expect = 5e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||| ||||| || |||||||| || ||||||||||| | ||| || Sbjct 10683178 ACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10683119 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||||||| ||||| ||||||||||| ||||| |||||||||||||| || ||||| Sbjct 10683118 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTG 10683060 Score = 114 bits (126), Expect = 2e-20 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || || || | ||| || ||||| ||||| ||||| || |||||||| | ||| || Sbjct 10682950 ACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTCA 10682891 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||||||||||||||| |||||||| || || |||||||||||||| |||||||| Sbjct 10682890 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGG 10682831 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 || || ||| ||| ||||| || || || |||||| Sbjct 10682830 ATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTTTA 10682771 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||||| || |||| || || ||||| Sbjct 10682770 CCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742 Score = 105 bits (116), Expect = 1e-17 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || || || | ||| || ||||| || || ||||| |||||||| || | ||| || Sbjct 10682038 ACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCA 10681979 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||||||||||||||| |||||||| || || ||||| |||||||| |||||||| Sbjct 10681978 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGA 10681919 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||| || || ||| ||||| || || || |||||| Sbjct 10681918 ATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTA 10681859 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||||| || |||| || || ||||| Sbjct 10681858 CCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830 Score = 102 bits (112), Expect = 1e-16 Identities = 127/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || || || |||||||| | ||| || | ||||||||| ||||| || |||||| Sbjct 10682467 ATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTT 10682408 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 || ||||| |||||||||||||| |||||||| ||| Sbjct 10682407 TGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTG 10682348 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || || ||| ||||| || || || |||||||||||||| || |||| || || ||| Sbjct 10682347 TCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGC 10682288 Query 146276 AT 146277 || Sbjct 10682287 AT 10682286 >seq1 Length=11693564 Score = 123 bits (136), Expect = 4e-23 Identities = 137/182 (75%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 209082 AAGGATTACACGGATTTCATGTTCATGAATATGGTGATGTGAGTAATGGTTGTACATCAG 209141 |||| |||||||| |||||| | ||| ||||||||||| | ||| || |||| || | Sbjct 10470105 AAGGTTTACACGGTTTTCATATCCATCAATATGGTGATTCAACTAACGGATGTATTTCTG 10470046 Query 209142 CAGGAGAACATTTTAATCCATATAATAGACAACATGGAGATATTAGTGATAAAATACATC 209201 | ||| ||| |||||||| | |||| | ||||||| | ||||| |||| || Sbjct 10470045 CTGGACCACACTTTAATCCTTTCAATAAAACTCATGGAGGACCTGGTGATGAAAT---TC 10469989 Query 209202 GTCATGTTGGTGATTTTGGTAATGTGTATGCAGACGAAAATGGCGTTGCTAATATTGATT 209261 |||||||||||||||| ||||| || | ||||| | ||||| |||||||| ||| ||| Sbjct 10469988 GTCATGTTGGTGATTTAGGTAACGTTGAAGCAGATGCTAATGGTGTTGCTAAGATTAATT 10469929 Query 209262 TT 209263 || Sbjct 10469928 TT 10469927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743525145299200