Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq2 132 7e-26
seq1 123 4e-23
>seq2
Length=16759152
Score = 132 bits (146), Expect = 7e-26
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|||||||| | ||| ||||| || |||||||| || ||||||||||| | ||| ||
Sbjct 10681810 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10681751
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188
| |||||||||||||||||| ||||| || ||||| ||||||||||||||||| |||||
Sbjct 10681750 AGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10681691
Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248
||| || ||| ||||| || || ||||| |||||
Sbjct 10681690 ATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTTG 10681631
Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||| || || |||| ||| ||||||||
Sbjct 10681630 CCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602
Score = 129 bits (142), Expect = 9e-25
Identities = 100/119 (84%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|||||||| | ||| ||||| || |||||||| || ||||||||||| | ||| ||
Sbjct 10682722 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10682663
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| |||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||
Sbjct 10682662 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG 10682604
Score = 120 bits (132), Expect = 5e-22
Identities = 98/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|||||||| | |||||||||||| ||||| || || || |||||||| | ||| ||
Sbjct 10682266 ACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682207
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| ||||||||| ||||| ||||||||||| ||||| || ||||||||||| ||||||||
Sbjct 10682206 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTG 10682148
Score = 120 bits (132), Expect = 5e-22
Identities = 98/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|||||||| | ||| ||||| || |||||||| || ||||||||||| | ||| ||
Sbjct 10683178 ACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10683119
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| ||||||||| ||||| ||||||||||| ||||| |||||||||||||| || |||||
Sbjct 10683118 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTG 10683060
Score = 114 bits (126), Expect = 2e-20
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|| || || | ||| || ||||| ||||| ||||| || |||||||| | ||| ||
Sbjct 10682950 ACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTCA 10682891
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188
| |||||||||||||||||| |||||||| || || |||||||||||||| ||||||||
Sbjct 10682890 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGG 10682831
Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248
|| || ||| ||| ||||| || || || ||||||
Sbjct 10682830 ATCTTTGATTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTTTA 10682771
Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277
|||||||| || |||| || || |||||
Sbjct 10682770 CCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742
Score = 105 bits (116), Expect = 1e-17
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|| || || | ||| || ||||| || || ||||| |||||||| || | ||| ||
Sbjct 10682038 ACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTCA 10681979
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188
| |||||||||||||||||| |||||||| || || ||||| |||||||| ||||||||
Sbjct 10681978 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGA 10681919
Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248
||| || || ||| ||||| || || || ||||||
Sbjct 10681918 ATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTA 10681859
Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277
|||||||| || |||| || || |||||
Sbjct 10681858 CCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 102 bits (112), Expect = 1e-16
Identities = 127/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155
||||| || || || |||||||| | ||| || | ||||||||| ||||| || ||||||
Sbjct 10682467 ATATTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTT 10682408
Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215
|| ||||| |||||||||||||| |||||||| |||
Sbjct 10682407 TGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTG 10682348
Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275
|| || ||| ||||| || || || |||||||||||||| || |||| || || |||
Sbjct 10682347 TCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGC 10682288
Query 146276 AT 146277
||
Sbjct 10682287 AT 10682286
>seq1
Length=11693564
Score = 123 bits (136), Expect = 4e-23
Identities = 137/182 (75%), Gaps = 3/182 (2%)
Strand=Plus/Minus
Query 209082 AAGGATTACACGGATTTCATGTTCATGAATATGGTGATGTGAGTAATGGTTGTACATCAG 209141
|||| |||||||| |||||| | ||| ||||||||||| | ||| || |||| || |
Sbjct 10470105 AAGGTTTACACGGTTTTCATATCCATCAATATGGTGATTCAACTAACGGATGTATTTCTG 10470046
Query 209142 CAGGAGAACATTTTAATCCATATAATAGACAACATGGAGATATTAGTGATAAAATACATC 209201
| ||| ||| |||||||| | |||| | ||||||| | ||||| |||| ||
Sbjct 10470045 CTGGACCACACTTTAATCCTTTCAATAAAACTCATGGAGGACCTGGTGATGAAAT---TC 10469989
Query 209202 GTCATGTTGGTGATTTTGGTAATGTGTATGCAGACGAAAATGGCGTTGCTAATATTGATT 209261
|||||||||||||||| ||||| || | ||||| | ||||| |||||||| ||| |||
Sbjct 10469988 GTCATGTTGGTGATTTAGGTAACGTTGAAGCAGATGCTAATGGTGTTGCTAAGATTAATT 10469929
Query 209262 TT 209263
||
Sbjct 10469928 TT 10469927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743525145299200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |