Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 242 3e-59 >seq2 Length=16759152 Score = 242 bits (268), Expect = 3e-59 Identities = 501/738 (68%), Gaps = 8/738 (1%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| | ||| ||||||||| |||| | || |||||||||||||||||||| Sbjct 14764754 GACATAACACCGAATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCC 14764695 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG--C 16046 || | ||||||||| ||||||||||||| || || || |||| || | | | | | Sbjct 14764694 TCAATTGAAATATTAACCATAAAATCAAAGGGGTTCTT--AACATTATAAAGTTTTGAAC 14764637 Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTT-CATTAAATCA 16105 | | ||||| ||| || || || ||| |||| ||||| ||| ||||||| Sbjct 14764636 AATTAAGTTCCACCAACAAATGGTCAGCTACATATTCAATATA-TGTACACATTAAACGT 14764578 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 |||||||||| || | | |||||| | || ||||| | | | ||||| |||| | Sbjct 14764577 GAGTTCATTCCAATCATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCA 14764518 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTT 16224 || || | | || || ||| ||| ||| | || | | || |||| | || | Sbjct 14764517 ACTGCATTTTTAATAATTTCTTTTA-TACGTTCTTCAGATGGTTTGTTTTCAAGGTAACT 14764459 Query 16225 AAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGA 16284 |||||| | || || ||||||| || ||||| || || || || || || || || Sbjct 14764458 AAACATAAGGCAGGCGAAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGA 14764399 Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 | ||| | |||||||| | || ||||| || | ||||||||| | ||||||||||| Sbjct 14764398 ATGTGTCAATCCTGGCATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACC 14764339 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtt 16404 ||||||||| ||||||||||| || ||||| |||| | ||| || || | || ||| Sbjct 14764338 AGAAAAGAAGATACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATT 14764279 Query 16405 tttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464 ||| | |||||| || |||||||| ||||||| | | | | | | | || Sbjct 14764278 CTTATCAGCGATCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATC 14764219 Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAA 16524 || |||||||| | | || |||| | | || ||||| || || || ||| Sbjct 14764218 TAAAGCATTAAAAAGTTTCATTCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTT 14764159 Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGC 16584 |||||| || |||||||| ||||| || || || |||||||| ||| | | || Sbjct 14764158 TGAATACATCTCACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGC 14764099 Query 16585 TTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644 |||| ||||| ||||| |||| || || | || || || ||||| || ||||| Sbjct 14764098 CTCGGGAATTTGAACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATC 14764039 Query 16645 GCTAGCTGCAAAAAACGC 16662 ||| ||||| || || Sbjct 14764038 AGAAGCGGCAAAGAAAGC 14764021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511219511000