Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq2 242 3e-59
>seq2
Length=16759152
Score = 242 bits (268), Expect = 3e-59
Identities = 501/738 (68%), Gaps = 8/738 (1%)
Strand=Plus/Minus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
|||||||| | ||| ||||||||| |||| | || ||||||||||||||||||||
Sbjct 14764754 GACATAACACCGAATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCC 14764695
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG--C 16046
|| | ||||||||| ||||||||||||| || || || |||| || | | | | |
Sbjct 14764694 TCAATTGAAATATTAACCATAAAATCAAAGGGGTTCTT--AACATTATAAAGTTTTGAAC 14764637
Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTT-CATTAAATCA 16105
| | ||||| ||| || || || ||| |||| ||||| ||| |||||||
Sbjct 14764636 AATTAAGTTCCACCAACAAATGGTCAGCTACATATTCAATATA-TGTACACATTAAACGT 14764578
Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165
|||||||||| || | | |||||| | || ||||| | | | ||||| |||| |
Sbjct 14764577 GAGTTCATTCCAATCATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCA 14764518
Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTT 16224
|| || | | || || ||| ||| ||| | || | | || |||| | || |
Sbjct 14764517 ACTGCATTTTTAATAATTTCTTTTA-TACGTTCTTCAGATGGTTTGTTTTCAAGGTAACT 14764459
Query 16225 AAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGA 16284
|||||| | || || ||||||| || ||||| || || || || || || || ||
Sbjct 14764458 AAACATAAGGCAGGCGAAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGA 14764399
Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344
| ||| | |||||||| | || ||||| || | ||||||||| | |||||||||||
Sbjct 14764398 ATGTGTCAATCCTGGCATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACC 14764339
Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtt 16404
||||||||| ||||||||||| || ||||| |||| | ||| || || | || |||
Sbjct 14764338 AGAAAAGAAGATACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATT 14764279
Query 16405 tttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464
||| | |||||| || |||||||| ||||||| | | | | | | | ||
Sbjct 14764278 CTTATCAGCGATCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATC 14764219
Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAA 16524
|| |||||||| | | || |||| | | || ||||| || || || |||
Sbjct 14764218 TAAAGCATTAAAAAGTTTCATTCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTT 14764159
Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGC 16584
|||||| || |||||||| ||||| || || || |||||||| ||| | | ||
Sbjct 14764158 TGAATACATCTCACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGC 14764099
Query 16585 TTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644
|||| ||||| ||||| |||| || || | || || || ||||| || |||||
Sbjct 14764098 CTCGGGAATTTGAACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATC 14764039
Query 16645 GCTAGCTGCAAAAAACGC 16662
||| ||||| || ||
Sbjct 14764038 AGAAGCGGCAAAGAAAGC 14764021
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462511219511000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |