Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq2 172 4e-38 >seq2 Length=16759152 Score = 172 bits (190), Expect = 4e-38 Identities = 410/620 (66%), Gaps = 0/620 (0%) Strand=Plus/Minus Query 20047 CCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTT 20106 |||||| |||| || ||| |||||||||||| |||||||||||||||| ||||| Sbjct 13736402 CCCTTAATAACAACTAAAAAAACATTTTGGAAAGGTATTGTTGAAGAGTTATTGTGGTTC 13736343 Query 20107 ATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCA 20166 ||| || || ||| | | || | | | || ||||| |||||| ||| Sbjct 13736342 ATTTCTGGTAGCACTAATGCAAAGGAATTAAGTGCTAGGGGGGTTAAAATTTGGGAAGCA 13736283 Query 20167 CATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTTG 20226 | ||| || | ||| | | | ||||||| | | ||||| || |||||| Sbjct 13736282 AACGGAAGTAGAGAGTTTCTCGATAATCTTGGATTTACTGAAAGACAAGAAGGCGATTTG 13736223 Query 20227 GGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACA 20286 || ||||| ||||| |||||||||||||||||||||||| ||| | | | || | Sbjct 13736222 GGACCTGTTTATGGTTTTCAATGGAGACATTTTGGAGCTACATACAAAGGCGTTGACGCC 13736163 Query 20287 AATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAAC 20346 ||||| || ||||| | |||||||| | || ||| || ||| || || || Sbjct 13736162 GATTATAGAGGTGAAGGAATTGATCAATTGGCCCAAGTAATTGATCAAATAAAGACCAAT 13736103 Query 20347 CCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCT 20406 || |||||||||||||||| || ||||| | ||| | | ||||| | Sbjct 13736102 CCTTTTTCAAGAAGAATTATTTTATCTGCATGGAATCCATCTGATCTTGATAAAATGGTT 13736043 Query 20407 TTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAA 20466 |||||||||||||||| || |||||||| ||| || ||||| || || Sbjct 13736042 TTGCCTCCATGTCATACTTTAGCTCAATTTTATGTTCAAGATGGAGAATTAAGTTGCCAT 13735983 Query 20467 ATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCG 20526 |||||||||| | ||| | || || |||||||| || || ||||| || | Sbjct 13735982 TTGTATCAACGTAGTGGGGATGTTGGTCTTGGTGTTCCATTTAACATTGCTTCATACTCT 13735923 Query 20527 CTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACC 20586 || | || ||||||||||| | ||| | || || ||||| || || ||||| Sbjct 13735922 CTTTTAACTCATATGATTGCAAAAGTTTGTGGAATAGCTACAGGTGAATTTGTTCACACT 13735863 Query 20587 ATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGA 20646 || ||||| || ||||| ||| ||||| || || | | ||| | || ||||| || Sbjct 13735862 ATTGGAGATGCTCATATATACAAAAATCACATTGATGCACTTAAACTTCAATTAACTCGT 13735803 Query 20647 CAACCAAAACAATTCCCAAC 20666 |||| | ||||| ||||| Sbjct 13735802 GAACCTTATCAATTTCCAAC 13735783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399183343217575