Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq2 172 4e-38
>seq2
Length=16759152
Score = 172 bits (190), Expect = 4e-38
Identities = 410/620 (66%), Gaps = 0/620 (0%)
Strand=Plus/Minus
Query 20047 CCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTT 20106
|||||| |||| || ||| |||||||||||| |||||||||||||||| |||||
Sbjct 13736402 CCCTTAATAACAACTAAAAAAACATTTTGGAAAGGTATTGTTGAAGAGTTATTGTGGTTC 13736343
Query 20107 ATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCA 20166
||| || || ||| | | || | | | || ||||| |||||| |||
Sbjct 13736342 ATTTCTGGTAGCACTAATGCAAAGGAATTAAGTGCTAGGGGGGTTAAAATTTGGGAAGCA 13736283
Query 20167 CATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTTG 20226
| ||| || | ||| | | | ||||||| | | ||||| || ||||||
Sbjct 13736282 AACGGAAGTAGAGAGTTTCTCGATAATCTTGGATTTACTGAAAGACAAGAAGGCGATTTG 13736223
Query 20227 GGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACA 20286
|| ||||| ||||| |||||||||||||||||||||||| ||| | | | || |
Sbjct 13736222 GGACCTGTTTATGGTTTTCAATGGAGACATTTTGGAGCTACATACAAAGGCGTTGACGCC 13736163
Query 20287 AATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAAC 20346
||||| || ||||| | |||||||| | || ||| || ||| || || ||
Sbjct 13736162 GATTATAGAGGTGAAGGAATTGATCAATTGGCCCAAGTAATTGATCAAATAAAGACCAAT 13736103
Query 20347 CCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCT 20406
|| |||||||||||||||| || ||||| | ||| | | ||||| |
Sbjct 13736102 CCTTTTTCAAGAAGAATTATTTTATCTGCATGGAATCCATCTGATCTTGATAAAATGGTT 13736043
Query 20407 TTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAA 20466
|||||||||||||||| || |||||||| ||| || ||||| || ||
Sbjct 13736042 TTGCCTCCATGTCATACTTTAGCTCAATTTTATGTTCAAGATGGAGAATTAAGTTGCCAT 13735983
Query 20467 ATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCG 20526
|||||||||| | ||| | || || |||||||| || || ||||| || |
Sbjct 13735982 TTGTATCAACGTAGTGGGGATGTTGGTCTTGGTGTTCCATTTAACATTGCTTCATACTCT 13735923
Query 20527 CTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACC 20586
|| | || ||||||||||| | ||| | || || ||||| || || |||||
Sbjct 13735922 CTTTTAACTCATATGATTGCAAAAGTTTGTGGAATAGCTACAGGTGAATTTGTTCACACT 13735863
Query 20587 ATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGA 20646
|| ||||| || ||||| ||| ||||| || || | | ||| | || ||||| ||
Sbjct 13735862 ATTGGAGATGCTCATATATACAAAAATCACATTGATGCACTTAAACTTCAATTAACTCGT 13735803
Query 20647 CAACCAAAACAATTCCCAAC 20666
|||| | ||||| |||||
Sbjct 13735802 GAACCTTATCAATTTCCAAC 13735783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399183343217575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |