Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq2 288 1e-72
>seq2
Length=16759152
Score = 288 bits (318), Expect = 1e-72
Identities = 540/789 (68%), Gaps = 10/789 (1%)
Strand=Plus/Minus
Query 13851 AAAACTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCA 13910
||| ||| ||||| |||| || | ||||||| || || | |||| ||||| || |
Sbjct 14764801 AAAGCTAGAAATCGGCATCCAATGTAAAAACACGTTCTTCATCTGTAGACATAACACCGA 14764742
Query 13911 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13970
||| ||||||||| |||| |||| |||||||| || ||||| || || | ||| ||||
Sbjct 14764741 ATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATAT 14764682
Query 13971 TTTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAAT 14029
| ||||||||||||| || || || |||| | | | ||| |||| ||||| |
Sbjct 14764681 TAACCATAAAATCAAAGGGGTTC-TTAACATTATAAAGTTTTGAACAATTAAGTTCCACC 14764623
Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089
| || || || | | ||||||||| | |||||||| | ||||| || ||
Sbjct 14764622 AACAAATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTTCATTCCAATC 14764563
Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149
| | ||||||| || || | |||| ||||| ||| || || | || |||
Sbjct 14764562 ATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAATA 14764503
Query 14150 ATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 14209
|| | ||| ||| | ||| || | || || | |||| || | || ||
Sbjct 14764502 ATTTCTTTTATACGTTCTTCAGATGGTTTGTTTTCAAGGTAACTAAACATAAGGCAGGCG 14764443
Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269
||||||| || | ||||||||||| ||| | ||| || ||| ||| |||||||||
Sbjct 14764442 AAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCAATCCTGGC 14764383
Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329
||||| || ||||| || | ||||||||| | ||| ||||| || |||||||| || ||
Sbjct 14764382 ATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGATACCT 14764323
Query 14330 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14389
||||| || ||||| || || | |||||||||||| | || || || | | ||||||
Sbjct 14764322 TCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTCTTATCAGCGATCCAT 14764263
Query 14390 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449
|| |||||| |||| ||||||| | ||||| | || | |||||||| |||
Sbjct 14764262 CTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCATTAA--AAA 14764205
Query 14450 TGTTCCTTCTCTTTAGTACTTGAAATGTAT----GTATCAATAAGTAAGCTATACATTTC 14505
||| | ||||| || ||| | |||| || || |||||| |||||| ||
Sbjct 14764204 GTTTCAT--TCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTTTGAATACATCTC 14764147
Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565
| ||| || |||||||| || || || |||||||| || | | || || | |||
Sbjct 14764146 ACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGAATTTG 14764087
Query 14566 TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625
|| ||| ||||||| ||| ||||||| |||||||| ||||||||| ||| |||||
Sbjct 14764086 AACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCGGCAAA 14764027
Query 14626 AAATGCCAA 14634
|| || ||
Sbjct 14764026 GAAAGCTAA 14764018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482344786041800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |