Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2 288 1e-72 >seq2 Length=16759152 Score = 288 bits (318), Expect = 1e-72 Identities = 540/789 (68%), Gaps = 10/789 (1%) Strand=Plus/Minus Query 13851 AAAACTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCA 13910 ||| ||| ||||| |||| || | ||||||| || || | |||| ||||| || | Sbjct 14764801 AAAGCTAGAAATCGGCATCCAATGTAAAAACACGTTCTTCATCTGTAGACATAACACCGA 14764742 Query 13911 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13970 ||| ||||||||| |||| |||| |||||||| || ||||| || || | ||| |||| Sbjct 14764741 ATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATAT 14764682 Query 13971 TTTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAAT 14029 | ||||||||||||| || || || |||| | | | ||| |||| ||||| | Sbjct 14764681 TAACCATAAAATCAAAGGGGTTC-TTAACATTATAAAGTTTTGAACAATTAAGTTCCACC 14764623 Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089 | || || || | | ||||||||| | |||||||| | ||||| || || Sbjct 14764622 AACAAATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTTCATTCCAATC 14764563 Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 | | ||||||| || || | |||| ||||| ||| || || | || ||| Sbjct 14764562 ATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAATA 14764503 Query 14150 ATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 14209 || | ||| ||| | ||| || | || || | |||| || | || || Sbjct 14764502 ATTTCTTTTATACGTTCTTCAGATGGTTTGTTTTCAAGGTAACTAAACATAAGGCAGGCG 14764443 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 ||||||| || | ||||||||||| ||| | ||| || ||| ||| ||||||||| Sbjct 14764442 AAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCAATCCTGGC 14764383 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329 ||||| || ||||| || | ||||||||| | ||| ||||| || |||||||| || || Sbjct 14764382 ATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGATACCT 14764323 Query 14330 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14389 ||||| || ||||| || || | |||||||||||| | || || || | | |||||| Sbjct 14764322 TCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTCTTATCAGCGATCCAT 14764263 Query 14390 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449 || |||||| |||| ||||||| | ||||| | || | |||||||| ||| Sbjct 14764262 CTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCATTAA--AAA 14764205 Query 14450 TGTTCCTTCTCTTTAGTACTTGAAATGTAT----GTATCAATAAGTAAGCTATACATTTC 14505 ||| | ||||| || ||| | |||| || || |||||| |||||| || Sbjct 14764204 GTTTCAT--TCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTTTGAATACATCTC 14764147 Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565 | ||| || |||||||| || || || |||||||| || | | || || | ||| Sbjct 14764146 ACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGAATTTG 14764087 Query 14566 TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 || ||| ||||||| ||| ||||||| |||||||| ||||||||| ||| ||||| Sbjct 14764086 AACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCGGCAAA 14764027 Query 14626 AAATGCCAA 14634 || || || Sbjct 14764026 GAAAGCTAA 14764018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482344786041800