Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq2 113 3e-20
>seq2
Length=16759152
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || || | ||| |||| ||||| || ||||||||||| || |||||||| |
Sbjct 10682284 CCTCCACGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAG 10682225
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | | |||||| | |||||| || ||| |||| | |||||||||||| ||
Sbjct 10682224 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGA 10682165
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||||||||||| ||||| | ||||| | ||| ||||| || || |
Sbjct 10682164 ATTCCTTCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACT 10682105
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| || || | || || || || || || ||||||||||||||
Sbjct 10682104 TCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || || | ||| || | |||||| ||||| || ||||| || |||||||| |
Sbjct 10682512 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAG 10682453
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | | |||||| | |||||| || ||| |||| | |||||||||||| ||
Sbjct 10682452 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGA 10682393
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||||||||||| ||| | | ||| || | ||| ||||||| || || |
Sbjct 10682392 ATTCCTTCCTTATCTTGAATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACT 10682333
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| || || |||| || || || || || |||||||| |||||
Sbjct 10682332 TCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682286
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || || | || |||| ||||| ||||| ||||||||||||||||| || |
Sbjct 10683424 CCTCCACGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAA 10683365
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| |||| | | ||| || | ||| || || ||| | || | |||||||||||| ||
Sbjct 10683364 AGTGTTCTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGG 10683305
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||||||||||| ||| | | ||||| | ||| ||||||| || || |
Sbjct 10683304 ATTCCTTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACT 10683245
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| || ||| |||| || || || || || |||||||| |||||
Sbjct 10683244 TCAAGAGTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198
Score = 107 bits (118), Expect = 1e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || || | ||| |||| || || |||||||| ||||| || || ||||| |
Sbjct 10681828 CCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10681769
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | | |||||| | |||||| || ||| | || | ||| |||||||| ||
Sbjct 10681768 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGA 10681709
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||||| || || ||| | | |||||| | ||| |||||| |||||
Sbjct 10681708 ATTCCTTCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACC 10681649
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332
|||| ||||| ||||||| ||||| || || || ||||||||||| |||||
Sbjct 10681648 TCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCATGGTTAAA 10681595
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || || | ||| || | |||||| ||||| ||||||||||||||||| || |
Sbjct 10682056 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAA 10681997
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | | |||||| | |||||| || ||| | || | ||||||||| || ||
Sbjct 10681996 AGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGG 10681937
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||||||||||| ||||| | ||||| | | | ||||||| || || |
Sbjct 10681936 ATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACT 10681877
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| || || |||| || || || || || |||||||| |||||
Sbjct 10681876 TCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10681830
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || || | ||| || | |||||| ||||| |||||||| || ||||| || |
Sbjct 10682968 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAG 10682909
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | | |||||| | |||||| || ||| | || | ||||||||| || ||
Sbjct 10682908 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGA 10682849
Query 18219 ACGCCTTCCTTATC--GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| ||||||||||| || |||| | ||||| | ||| |||||| || ||
Sbjct 10682848 ATTCCTTCCTTATCTTGGATCTTTGAT--TTGACATTGTCAATGGTGTCAGAAGGTTCAA 10682791
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| || || |||| || || || || || |||||||| |||||
Sbjct 10682790 CTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCAT 10682742
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || || | ||| |||| ||||| |||||||| ||||| || || ||||| |
Sbjct 10683196 CCTCCACGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10683137
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | | |||||| | |||||| || ||| |||| | |||||||||||| ||
Sbjct 10683136 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 10683077
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277
| |||||||| || ||| | ||| || | | || | | ||||| || ||
Sbjct 10683076 ATTCCTTCCTTGTCTTGAATCT-TTGATTTAACATTGTCGATGGTGTCGGATGGTTCTAC 10683018
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| || || | || || || || || || ||||||||||||||
Sbjct 10683017 TTCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379343375860575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |