Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2 185 8e-42
>seq2
Length=16759152
Score = 185 bits (204), Expect = 8e-42
Identities = 528/811 (65%), Gaps = 8/811 (1%)
Strand=Plus/Plus
Query 57621 GTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTT 57680
|| |||||| || ||| |||| || ||||| || | | ||| |||| | ||||
Sbjct 14763946 GTTGACCTGGGAAAAGATATGAGAGACTGGGAATCAATGACAGACAATGAGCGTTTTTTT 14764005
Query 57681 ATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTC 57740
||| || || || || || || ||||| || |||||||||||||| ||||||||||||
Sbjct 14764006 ATTTCACGTGTCTTAGCTTTCTTTGCCGCTTCTGATGGTATTGTTAATGAGAATTTGGTC 14764065
Query 57741 GAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTG 57800
|| |||||||| ||||||| ||| | | ||||| | | ||| || || || ||| |
Sbjct 14764066 GAGAGATTTTCTAAAGAAGTTCAAATTCCCGAGGCACGTTTCTTCTATGGTTTCCAAATT 14764125
Query 57801 GCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC 57860
||||| ||||| | || || |||||||| ||| ||||| || || | |||
Sbjct 14764126 GCCATGGAAAATATTCACAGTGAGATGTATTCAAAACTTATCGAAACCTATATACGTGAC 14764185
Query 57861 AACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAG 57920
|| ||||| | | | ||| || || || | || | || ||| || ||
Sbjct 14764186 AATGACGAAAGAATGAAACTTTTTAATGCTTTAGATGAGTTTCCATTTATCAGAAAAAAA 14764245
Query 57921 GCAGAGTGGTCAATCAAATGGA----TAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCT 57976
|| || ||| | | | ||||| | | ||| | || || || | || | |
Sbjct 14764246 GCTGATTGGGCTTTAAGATGGATCGCTGATAAG----AATGCTACTTTTGGAGAACGAGT 14764301
Query 57977 AATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTG 58036
|| || || || || || |||||||| |||||||| || ||||| | ||||||||
Sbjct 14764302 TATTGCTTTTGCAGCTGTTGAAGGTATCTTCTTTTCTGGTTCATTTGCTTCCATATTTTG 14764361
Query 58037 GATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGA 58096
| |||||||||| || ||||||| || |||| | ||| || ||||| || | ||
Sbjct 14764362 GCTGAAGAAACGTGGTTTGATGCCAGGATTGACACATTCCAATGAATTGATTTCAAGAGA 14764421
Query 58097 CGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGAC 58156
||||| | || |||||| || ||||| |||| | || ||| || ||||| |
Sbjct 14764422 TGAGGGATTACACCGTGATTTCGCCTGCCTTATGTTTAGTTACCTTGAAAACAAACCATC 14764481
Query 58157 GCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216
|| || || || ||||| | | || || | || ||||| || | | ||
Sbjct 14764482 TGAAGAACGTATAAAAGAAATTATTAAAAATGCAGTTGATATTGAAAAGGAATACCTTAC 14764541
Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276
|| || || || || | ||| | || |||||| ||| |||| | || |||||
Sbjct 14764542 AGATGCTCTTCCTGTTGATATGATTGGAATGAACTCACGTTTAATGTGTACATATATTGA 14764601
Query 58277 GTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCATTACAACACGAAAAA 58336
| ||| || ||| | ||| | ||||| | | | | ||| || || ||
Sbjct 14764602 ATATGTAGCTGACCATTTGTTGGTGGAACTTAATTGTTCAAAACTTTATAATGTTAAGAA 14764661
Query 58337 TCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaa 58396
|| |||||||||||| | || || | ||||| || ||||| || || || |||||
Sbjct 14764662 CCCCTTTGATTTTATGGTTAATATTTCAATTGAGGGAAAAACAAATTTCTTTGAGAAAAA 14764721
Query 58397 aGTTAGCGAATATCAAAAATACGGCGTGATG 58427
|||| |||||||| |||| ||| || |||
Sbjct 14764722 AGTTTCTGAATATCAGAAATTCGGTGTTATG 14764752
Score = 113 bits (124), Expect = 4e-20
Identities = 167/234 (71%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
|| ||||||||||||||| |||||| ||||||||||||| ||||| | || || || ||
Sbjct 10681598 AACCATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCC 10681657
Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
||||||| | | || | ||||| || || || ||||| ||||| | || || |
Sbjct 10681658 TTCCGACACTATTGACAATGTCAAGTCAAAG-ATTCAAGACAAAGAAGGAATTCCTCCAG 10681716
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
| || ||| | |||| || ||||| ||||| | ||||| | ||| | || |
Sbjct 10681717 ATCAACAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACT 10681776
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||| || ||||| ||||| ||||| ||| |||| ||| | || | || ||||
Sbjct 10681777 ATAATATCCAAAAGGAATCAACTCTCCATTTGGTTCTTCGTCTTCGTGGAGGTA 10681830
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| || ||||| | ||||| ||||| || || | || |||||||| ||
Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| | |||||| | ||| || |||||||| | || || |||||
Sbjct 10681890 GACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAA 10681949
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| | |||| || ||||| ||||| | ||||| | |||| | ||||| |||
Sbjct 10681950 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAAC 10682009
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||||||||| || |||||||| | || ||| | || | || ||||
Sbjct 10682010 ATTCAAAAAGAGTCAACTCTTCACTTAGTTCTTCGTCTTCGTGGAGGTA 10682058
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||| | ||||| || || || || | || || ||||| |||
Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| || | | || || || || ||||||||||| | || || || ||
Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAG-ATTCAAGACAAGGAAGGAATTCCTCCAGATCA 10683088
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|| | | || || || || ||||| | ||||| | ||| | || |||||
Sbjct 10683089 ACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAA 10683148
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| ||||| ||||||||| |||| ||| | || | || ||||
Sbjct 10683149 TATCCAAAAGGAATCAACTCTTCATTTGGTTCTTCGTCTTCGTGGAGGTA 10683198
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||| | ||||| || || || || | || || ||||| |||
Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | |||||| | ||| || |||||||| | || || || ||
Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| | | || || || || ||||| | ||||| | ||| | || || ||
Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||||||||| ||||||||| |||| ||| | || | || ||||
Sbjct 10682238 ATCCAAAAAGAATCTACTCTTCATTTGGTTCTTCGTCTTCGTGGAGGTA 10682286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765647769200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |