Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 185 8e-42 >seq2 Length=16759152 Score = 185 bits (204), Expect = 8e-42 Identities = 528/811 (65%), Gaps = 8/811 (1%) Strand=Plus/Plus Query 57621 GTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTT 57680 || |||||| || ||| |||| || ||||| || | | ||| |||| | |||| Sbjct 14763946 GTTGACCTGGGAAAAGATATGAGAGACTGGGAATCAATGACAGACAATGAGCGTTTTTTT 14764005 Query 57681 ATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTC 57740 ||| || || || || || || ||||| || |||||||||||||| |||||||||||| Sbjct 14764006 ATTTCACGTGTCTTAGCTTTCTTTGCCGCTTCTGATGGTATTGTTAATGAGAATTTGGTC 14764065 Query 57741 GAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTG 57800 || |||||||| ||||||| ||| | | ||||| | | ||| || || || ||| | Sbjct 14764066 GAGAGATTTTCTAAAGAAGTTCAAATTCCCGAGGCACGTTTCTTCTATGGTTTCCAAATT 14764125 Query 57801 GCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC 57860 ||||| ||||| | || || |||||||| ||| ||||| || || | ||| Sbjct 14764126 GCCATGGAAAATATTCACAGTGAGATGTATTCAAAACTTATCGAAACCTATATACGTGAC 14764185 Query 57861 AACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAG 57920 || ||||| | | | ||| || || || | || | || ||| || || Sbjct 14764186 AATGACGAAAGAATGAAACTTTTTAATGCTTTAGATGAGTTTCCATTTATCAGAAAAAAA 14764245 Query 57921 GCAGAGTGGTCAATCAAATGGA----TAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCT 57976 || || ||| | | | ||||| | | ||| | || || || | || | | Sbjct 14764246 GCTGATTGGGCTTTAAGATGGATCGCTGATAAG----AATGCTACTTTTGGAGAACGAGT 14764301 Query 57977 AATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTG 58036 || || || || || || |||||||| |||||||| || ||||| | |||||||| Sbjct 14764302 TATTGCTTTTGCAGCTGTTGAAGGTATCTTCTTTTCTGGTTCATTTGCTTCCATATTTTG 14764361 Query 58037 GATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGA 58096 | |||||||||| || ||||||| || |||| | ||| || ||||| || | || Sbjct 14764362 GCTGAAGAAACGTGGTTTGATGCCAGGATTGACACATTCCAATGAATTGATTTCAAGAGA 14764421 Query 58097 CGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGAC 58156 ||||| | || |||||| || ||||| |||| | || ||| || ||||| | Sbjct 14764422 TGAGGGATTACACCGTGATTTCGCCTGCCTTATGTTTAGTTACCTTGAAAACAAACCATC 14764481 Query 58157 GCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 || || || || ||||| | | || || | || ||||| || | | || Sbjct 14764482 TGAAGAACGTATAAAAGAAATTATTAAAAATGCAGTTGATATTGAAAAGGAATACCTTAC 14764541 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 || || || || || | ||| | || |||||| ||| |||| | || ||||| Sbjct 14764542 AGATGCTCTTCCTGTTGATATGATTGGAATGAACTCACGTTTAATGTGTACATATATTGA 14764601 Query 58277 GTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCATTACAACACGAAAAA 58336 | ||| || ||| | ||| | ||||| | | | | ||| || || || Sbjct 14764602 ATATGTAGCTGACCATTTGTTGGTGGAACTTAATTGTTCAAAACTTTATAATGTTAAGAA 14764661 Query 58337 TCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaa 58396 || |||||||||||| | || || | ||||| || ||||| || || || ||||| Sbjct 14764662 CCCCTTTGATTTTATGGTTAATATTTCAATTGAGGGAAAAACAAATTTCTTTGAGAAAAA 14764721 Query 58397 aGTTAGCGAATATCAAAAATACGGCGTGATG 58427 |||| |||||||| |||| ||| || ||| Sbjct 14764722 AGTTTCTGAATATCAGAAATTCGGTGTTATG 14764752 Score = 113 bits (124), Expect = 4e-20 Identities = 167/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || ||||||||||||||| |||||| ||||||||||||| ||||| | || || || || Sbjct 10681598 AACCATGCAAATTTTCGTTAAGACTTTGACAGGCAAAACTATCACTCTTGAGGTAGAGCC 10681657 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 ||||||| | | || | ||||| || || || ||||| ||||| | || || | Sbjct 10681658 TTCCGACACTATTGACAATGTCAAGTCAAAG-ATTCAAGACAAAGAAGGAATTCCTCCAG 10681716 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | || ||| | |||| || ||||| ||||| | ||||| | ||| | || | Sbjct 10681717 ATCAACAGAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACT 10681776 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| || ||||| ||||| ||||| ||| |||| ||| | || | || |||| Sbjct 10681777 ATAATATCCAAAAGGAATCAACTCTCCATTTGGTTCTTCGTCTTCGTGGAGGTA 10681830 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| | ||||| ||||| || || | || |||||||| || Sbjct 10681830 ATGCAGATTTTTGTTAAGACCTTAACAGGTAAAACTATTACTCTTGAAGTTGAACCATCT 10681889 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | |||||| | ||| || |||||||| | || || ||||| Sbjct 10681890 GACACTATCGACAACGTCAAATCAAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAA 10681949 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | |||| || ||||| ||||| | ||||| | |||| | ||||| ||| Sbjct 10681950 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTTCTGATTACAAC 10682009 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| || |||||||| | || ||| | || | || |||| Sbjct 10682010 ATTCAAAAAGAGTCAACTCTTCACTTAGTTCTTCGTCTTCGTGGAGGTA 10682058 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| | ||||| || || || || | || || ||||| ||| Sbjct 10682970 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10683029 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| || | | || || || || ||||||||||| | || || || || Sbjct 10683030 GACACCATCGACAATGTTAAATCAAAG-ATTCAAGACAAGGAAGGAATTCCTCCAGATCA 10683088 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | | || || || || ||||| | ||||| | ||| | || ||||| Sbjct 10683089 ACAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTTTCTGACTATAA 10683148 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| ||||| ||||||||| |||| ||| | || | || |||| Sbjct 10683149 TATCCAAAAGGAATCAACTCTTCATTTGGTTCTTCGTCTTCGTGGAGGTA 10683198 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| | ||||| || || || || | || || ||||| ||| Sbjct 10682058 ATGCAAATTTTTGTCAAGACTTTAACAGGAAAGACTATTACTCTTGAAGTAGAACCATCC 10682117 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| || |||||||| | || || || || Sbjct 10682118 GACACCATTGACAATGTCAAATCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAA 10682177 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || || || ||||| | ||||| | ||| | || || || Sbjct 10682178 CAAAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAT 10682237 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| ||||||||| |||| ||| | || | || |||| Sbjct 10682238 ATCCAAAAAGAATCTACTCTTCATTTGGTTCTTCGTCTTCGTGGAGGTA 10682286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765647769200