Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq2 136 8e-27
seq1 84.2 4e-11
>seq2
Length=16759152
Score = 136 bits (150), Expect = 8e-27
Identities = 288/427 (67%), Gaps = 22/427 (5%)
Strand=Plus/Minus
Query 35384 GATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCT 35443
|| ||| ||| || ||||||||||| || || || || |||||| | |||||||| |||
Sbjct 13736243 GAAAGACAAGAAGGCGATTTGGGACCTGTTTATGGTTTTCAATGGAGACATTTTGGAGCT 13736184
Query 35444 GAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCC-----A 35498
||| | | | ||||||||| || | || ||||||||||||||| |
Sbjct 13736183 ACATACAAAGGCGTTGACGCCGATTATAGAGGTGAAGGAATTGATCAATTGGCCCAAGTA 13736124
Query 35499 AT--AT--ACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCA 35554
|| || | |||||||| ||||| | ||||| || ||| | | |||
Sbjct 13736123 ATTGATCAAATAAAGACC---------AATCCTTTTTCAAGAAGAATTATTTTATCTGCA 13736073
Query 35555 TGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTT 35614
|||||||| |||||| | |||| | | |||||||| || | |||||||||
Sbjct 13736072 TGGAATCCATCTGATCTTGATAAAATGGTTTTGCCTCCATGTCATACTTTAGCTCAATTT 13736013
Query 35615 TATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTG 35674
||||| |||||||||| ||||| |||||||| || || || ||||| || |
Sbjct 13736012 TATGTTCAAGATGGAGAATTAAGTTGCCATTTGTATCAACGTAGTGGGGATGTTGGTCTT 13735953
Query 35675 GGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGC--CAGTATGG 35732
|| || || || || ||||| |||||||||||| | |||||| |||| || ||| ||
Sbjct 13735952 GGTGTTCCATTTAACATTGCTTCATACTCTCTTTTAACTCATATGATTGCAAAAGTTTG- 13735894
Query 35733 TGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCC 35792
|| || | || || ||| | | |||| |||| || || || || || || | |
Sbjct 13735893 -TGGAATAGCTACAGGTGAATTTGTTCACACTATTGGAGATGCTCATATATACAAAAATC 13735835
Query 35793 ACATTGA 35799
|||||||
Sbjct 13735834 ACATTGA 13735828
>seq1
Length=11693564
Score = 84.2 bits (92), Expect = 4e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851
|| ||||||| || || || | ||| | |||||||||||||| ||||| |||||
Sbjct 6014674 CCGCCAGCAGATTTTGAAATTAATGCACATTGTTTAAGAGTATCATATATACCTTCAATT 6014733
Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTG-TTCCACA 94910
|||||| | || | ||| ||||| || || || || | ||| ||||
Sbjct 6014734 GAATCATCAGACATTGTTAGTAAGAAACACGAAGACAGCTGTGGAC-GTCTGGTTCCTGC 6014792
Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970
|||||| | ||| || || ||||| ||||| | | | ||||| |||||||||||
Sbjct 6014793 ATTAAATAATGTTGGAGAGGCATGAGTAAACCACTTCTGAGACATATAGTCATATGTTTC 6014852
Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCAT 95018
||| ||||| || || || || ||||| || || |||||||||||
Sbjct 6014853 AATAACAGAATTAATATCATCCCCATGAATTCCAACTGCCACACGCAT 6014900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989582288328925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |