Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2 136 8e-27 seq1 84.2 4e-11 >seq2 Length=16759152 Score = 136 bits (150), Expect = 8e-27 Identities = 288/427 (67%), Gaps = 22/427 (5%) Strand=Plus/Minus Query 35384 GATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCT 35443 || ||| ||| || ||||||||||| || || || || |||||| | |||||||| ||| Sbjct 13736243 GAAAGACAAGAAGGCGATTTGGGACCTGTTTATGGTTTTCAATGGAGACATTTTGGAGCT 13736184 Query 35444 GAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCC-----A 35498 ||| | | | ||||||||| || | || ||||||||||||||| | Sbjct 13736183 ACATACAAAGGCGTTGACGCCGATTATAGAGGTGAAGGAATTGATCAATTGGCCCAAGTA 13736124 Query 35499 AT--AT--ACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCA 35554 || || | |||||||| ||||| | ||||| || ||| | | ||| Sbjct 13736123 ATTGATCAAATAAAGACC---------AATCCTTTTTCAAGAAGAATTATTTTATCTGCA 13736073 Query 35555 TGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTT 35614 |||||||| |||||| | |||| | | |||||||| || | ||||||||| Sbjct 13736072 TGGAATCCATCTGATCTTGATAAAATGGTTTTGCCTCCATGTCATACTTTAGCTCAATTT 13736013 Query 35615 TATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTG 35674 ||||| |||||||||| ||||| |||||||| || || || ||||| || | Sbjct 13736012 TATGTTCAAGATGGAGAATTAAGTTGCCATTTGTATCAACGTAGTGGGGATGTTGGTCTT 13735953 Query 35675 GGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGC--CAGTATGG 35732 || || || || || ||||| |||||||||||| | |||||| |||| || ||| || Sbjct 13735952 GGTGTTCCATTTAACATTGCTTCATACTCTCTTTTAACTCATATGATTGCAAAAGTTTG- 13735894 Query 35733 TGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCC 35792 || || | || || ||| | | |||| |||| || || || || || || | | Sbjct 13735893 -TGGAATAGCTACAGGTGAATTTGTTCACACTATTGGAGATGCTCATATATACAAAAATC 13735835 Query 35793 ACATTGA 35799 ||||||| Sbjct 13735834 ACATTGA 13735828 >seq1 Length=11693564 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || ||||||| || || || | ||| | |||||||||||||| ||||| ||||| Sbjct 6014674 CCGCCAGCAGATTTTGAAATTAATGCACATTGTTTAAGAGTATCATATATACCTTCAATT 6014733 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTG-TTCCACA 94910 |||||| | || | ||| ||||| || || || || | ||| |||| Sbjct 6014734 GAATCATCAGACATTGTTAGTAAGAAACACGAAGACAGCTGTGGAC-GTCTGGTTCCTGC 6014792 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 |||||| | ||| || || ||||| ||||| | | | ||||| ||||||||||| Sbjct 6014793 ATTAAATAATGTTGGAGAGGCATGAGTAAACCACTTCTGAGACATATAGTCATATGTTTC 6014852 Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCAT 95018 ||| ||||| || || || || ||||| || || ||||||||||| Sbjct 6014853 AATAACAGAATTAATATCATCCCCATGAATTCCAACTGCCACACGCAT 6014900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989582288328925