Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 654 0.0 seq2 596 2e-165 >seq1 Length=11693564 Score = 654 bits (724), Expect = 0.0 Identities = 1443/2142 (67%), Gaps = 65/2142 (3%) Strand=Plus/Plus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || ||||| || | || || |||||||| ||||||| || | |||| | | |||| Sbjct 6013174 GCAGGTTTTGTTCTTAAGTAATACATTCCAGTTTTTAATCCACGTTTCCAACTATGAAAA 6013233 Query 64920 TGCAT---ACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 64976 ||||| ||| | ||| ||| || | || | ||| | ||| | ||||| Sbjct 6013234 TGCATTGAACTACAAA---TGGCATATGATGGTTTAGCAACATGAAGATTAAGCGATTGT 6013290 Query 64977 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATT 65036 |||||| || || || || | || |||||||| | || || ||||| | ||| Sbjct 6013291 GATTGATCTATAAAAGCACCACGATCAGCAGCCATCTCAATTATATCTTTTTGAGATATT 6013350 Query 65037 TCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATG 65093 ||||||| ||||||||||| | ||||||| ||||| | | || || || || Sbjct 6013351 TCCCAAACAGTTTTATAAAGTTCTTTAATATTAGGTGGAATTTCTTTAATATTTTGGATA 6013410 Query 65094 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 65153 |||||| || || || ||| |||| | | ||| ||| |||||| || || || Sbjct 6013411 GATCCATTATTAGCTATTATCTCATTCATTAACTCTTCACTCCATATGTTAAGATCAATT 6013470 Query 65154 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 65213 ||| || |||| ||||| ||||| || | ||| || ||||| || | || | | |||| Sbjct 6013471 AAATCTTTAAGAAGATGAGGATTGACAATTTGGAAATCTCCTGAAAGAACACGTCTAGTG 6013530 Query 65214 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 65273 ||||| ||| ||||| ||||| | ||| ||||||||||| | ||| || |||||||| Sbjct 6013531 TAAATGTTAGAAGTATATGGTTCAATAGATTCATTATTTCCTAGAATCTGTGCAGTTGAA 6013590 Query 65274 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTAT 65331 ||||| ||||| || || | |||||| |||||| | ||| ||||| || || | Sbjct 6013591 GCAGTTGGCATTGGAGCAAGTAATAAAGAATTTCTTACACC--ATGTTTTGCAATGTCTG 6013648 Query 65332 CTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTA 65391 |||||| || |||||||| ||| | ||| ||| || ||| | Sbjct 6013649 CTTTTAAAGTTTCCCAATCCCATAAATCACTTGGTTTGACATTCCACATGTCATATTGAA 6013708 Query 65392 GAATACCGTT----ACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 65447 ||||||| || ||||| | |||| ||||||| || || || || || ||| Sbjct 6013709 GAATACCTTTTGATACTGGAG----ATCCATCATATGTCTCATAAGGACCATCACGTTCA 6013764 Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 65507 |||| |||||| || || ||||| || | ||||| ||||| || ||| |||||| Sbjct 6013765 GCTACTTCACATGAAGCTTCCAATGCTCCATGGTAAATTGTTTCAAAAATCAACTTATTA 6013824 Query 65508 AGATCTTGTGCTTCCAGGCTA--TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 65565 || |||| || | ||| | | ||| |||||| | || ||||| || || |||| Sbjct 6013825 AGTTCTTTAGCGGC-AGGTGAAGTGAAA-GGATAACGCATAAGCATAAATGCATCAGCTA 6013882 Query 65566 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 65625 | || |||||||||||||| || || | |||||| |||| || || ||||| || | Sbjct 6013883 AACCCTGAACACCAATACCAATTGGACGGTGTCTCATATTTGATTTTCTGGCTTCAGGGA 6013942 Query 65626 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG---ACAATTACTTTGACCA 65682 |||||||||||| | ||| ||||||||||| | |||| | | |||| || || | Sbjct 6013943 CAGGATAATAATTGACATCAATAATTTTATTCAAATTTTTAGTTAGAATT--TTAGAA-A 6013999 Query 65683 CATCCTTCAGTT-TGAGAAAATCAAATC--GCT---CATCTA----TT--ACAAACATGT 65730 || | | |||| | |||| | ||| | | | |||||| || ||||| | | Sbjct 6014000 CAACATGAAGTTGTTTGAAATTAAAAGCAGGTTTACCATCTACAACTTCAACAAATCTAT 6014059 Query 65731 TCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTA 65790 | | |||| |||| | |||||||| || || || |||| | | ||||| | | Sbjct 6014060 TAAGAGCAATAGATCCTAGATTACATACAGCAACTTCATCTGGTGCACAATATTCAACAA 6014119 Query 65791 TCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGT 65850 | ||||| || | ||| ||| || |||||||| | ||||||||||||||| || | Sbjct 6014120 TTTCAGTACATAAATTTGAACATTTAATGGTTCCAAGATTTTGTTGATTACTTTTACGAT 6014179 Query 65851 TACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCG 65910 |||| ||| || |||| || | || || || |||||||| ||| ||| |||| Sbjct 6014180 TACAATGATCTTTGTAAACCATATAAGGTGTTCCGGTTTCAATTTGACTTTCACAAATCT 6014239 Query 65911 CTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTC--TTTCGTA-TA 65967 || ||| | |||| ||||||||| | ||| | | | |||||| |||| || | Sbjct 6014240 TTTGCCAAATAACTCTGGCCTTTATTT--GTTTTCTGTAACGTTTCTCATTTTCATACTT 6014297 Query 65968 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 66027 ||| ||| ||| || || | || |||||| || || | |||||||||||| | | Sbjct 6014298 GTG-ATATAATTCCTCAAAAGCCTCACCCCAAGTATCCTCAAGTCCAGGACATTCGTGGG 6014356 Query 66028 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 66087 | |||||||| ||||| | ||| | || || ||||||||||| | ||||||||||| Sbjct 6014357 GGCACATCAAAGACCAATAAGAGTCTTTCTCTACACGTTTCATAAATAAATCAGGAATCC 6014416 Query 66088 AAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 66147 ||||| | ||||||||| | | ||| | ||| || |||||||| || ||||||| Sbjct 6014417 AAAGACCATAAAATAAATCACGAGCTCTTTCTTCTTCAGGGCCTGTATTTTTCTTAAGAT 6014476 Query 66148 CGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 66207 | | || | | ||| ||| |||||| ||||| | ||||| || | ||||||| | Sbjct 6014477 CCAAAAATTCTAAAATGTCAGCATGCCATGGTTCTAGATATATAGCAAATGCTCCAGGTC 6014536 Query 66208 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 66267 ||| ||||| || || || | || | || || || ||| |||||||||||||||| | Sbjct 6014537 TTTTATTTCCCCCTTGGTCAACATAGCGTGCTGTATTGTTAAAAACTCTCAACATTGGTA 6014596 Query 66268 TAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTAC 66327 | | ||||| ||||||||||| || || ||| | ||| | ||||||||| | Sbjct 6014597 TTAATCCATTAGATGTACCATTTGTACCACCAATAAAAGAACCATTAGCACGAATACAAT 6014656 Query 66328 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 66387 || | || || || || || ||| || |||||||| ||| |||| | |||| Sbjct 6014657 GAACATTCAATCCAATACCGCCAGCAGATTTTGAAATTAATGCACATTGTTTAAGAGTAT 6014716 Query 66388 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 66447 |||| || || || || |||||| ||| | |||| ||||| ||||| || Sbjct 6014717 CATATATACCTTCAATTGAATCATCAGACATTGTTAGTAAGAAACACGAAGACAGCTGTG 6014776 Query 66448 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-A 66506 |||| || ||||| ||||||||||| || ||||| || || |||||||| || | ||| | Sbjct 6014777 GACGTCTGGTTCCTGCATTAAATAATGTTGGAGAGGCATGAGTAAACCACTTCTGAGACA 6014836 Query 66507 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACA 66566 ||| | || || |||||| | || | ||||| ||||||||| ||||| ||| Sbjct 6014837 TATAG-TCATATGTTTCAATAACAGAATTAATATCATCCCCATGAATTCCAACTGCCACA 6014895 Query 66567 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAT 66626 |||||||| | || || ||||||||| | | || |||||||| || | || || Sbjct 6014896 CGCATTAATAAATGTTGTGGTCTTTCAGCAACTTTCCCATTTATTTTTAATAGATATGAA 6014955 Query 66627 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 66686 ||| | || ||||| |||||||| | | ||| |||| | |||| ||| | Sbjct 6014956 CGTTCAAGTGTCTTAAATCCAAAATAAGAGAAATCAAAATCTCTGTTATAAACGATAGCA 6015015 Query 66687 GAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAAT------ACTTGAAATA 66740 || || |||||||| || ||| || | | | || | | |||| || Sbjct 6015016 GAATTAAGTTTATCAGCATGTTTTTTGATGATGT---TGTGAGTTTCCTCACTT---ATC 6015069 Query 66741 ATCGGAGAATGTTTCCCATTTTTAGGATTGAC-ATAGTTGAATAAATCCTCCATCACTTC 66799 || || |||| | | | | || || |||| |||||| |||| || ||| |||| Sbjct 6015070 ATTGGCAAATG-TACTCCTGTTACAGAATGACGATAGTTATATAAGTCACTCATAGCTTC 6015128 Query 66800 ACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAAT 66859 ||| ||| ||||||| ||| || | ||| || || || ||||| || |||| || Sbjct 6015129 TGAAAAACTTTTCTTTGTTTGTTTATGCATATTAGAAACAGCAATTCTTGCAGCTAGTAT 6015188 Query 66860 GGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAA 66919 |||||||| ||||| ||| || | | || | | ||| || || | | | || || Sbjct 6015189 AGCATAATCTGGATGAATTGTCGTCATACTTGCAGAAACTTCAGCAGCTAAATTATCTAA 6015248 Query 66920 TTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 66961 ||| || |||| ||| |||||||| | |||||||||||| || Sbjct 6015249 TTCAACTGTTGATACACCATTATACAATCCTTGGATAACTTT 6015290 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 31225 TCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAATATGTGTA 31284 || || || | |||||||||| ||||||||||||| || || || | |||||||||| | Sbjct 581502 TCTTTAACTTCAGTTAATGATTTCCAATCCATATTTGCACTACCAATATAAATATGTTTT 581561 Query 31285 TTATCAGATATCCAAAATTTTGTATGAAGAACTCC 31319 | |||| ||||||||||||||||| | ||| || Sbjct 581562 TGATCAACAATCCAAAATTTTGTATGTAAAACACC 581596 >seq2 Length=16759152 Score = 596 bits (660), Expect = 2e-165 Identities = 1380/2055 (67%), Gaps = 55/2055 (3%) Strand=Plus/Minus Query 64857 GATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAA 64916 || || ||||| || | || ||| |||||||||||||||| || | ||||||| ||| Sbjct 8586477 GAAGCTGGTTTAGTTCTTAAATAATACATTCCCGTTTTTAAGCCACGTTTCCATCCATAA 8586418 Query 64917 AAATGCAT---ACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 64973 |||||||| ||| || | |||| | || | || || | | | | ||| Sbjct 8586417 AAATGCATTGAACTACATA---TACCATAAGTTGGTTTACTTAGATAAAGACTAAGTGAT 8586361 Query 64974 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTT-GTGG 65032 ||| |||||| || || | |||| || ||||||||| || || ||||||| ||| Sbjct 8586360 TGAGATTGATCAATAAAAGGCCCCCGATCAGCAGCCATTCCAATAAT-GTCTTTTTGTGA 8586302 Query 65033 AATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTG 65089 ||||||||| | ||||||||||| | | || |||| ||||| | | |||| || Sbjct 8586301 AATTTCCCATACAGTTTTATAAAGTTCTTGGATGTCTTTTGGAATATCAGGTATATTTTG 8586242 Query 65090 AATGGATCCACCATCTGCCATAATCCTATTCT-TGATCTCATCATTCCATAATTTTCTCT 65148 |||||||||| || | | || || |||| | ||| | |||||||| | || Sbjct 8586241 AATGGATCCATTATTTTCAATTATTTTATTGAGTAATC-CTTCATTCCAAATATTAAGAG 8586183 Query 65149 CGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCC 65208 ||||| | | || ||||| | ||| || |||||||| |||||||| || |||| || Sbjct 8586182 AAATTAAATCACGTAGAAGATGAGTATTTACAACTTGAAAATCTCCAGATAAAACTCGCC 8586123 Query 65209 GAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAG 65268 || || |||||| ||||| ||||| | ||| ||||| ||||| | |||||||| | Sbjct 8586122 TTGTATATATATTAGAAGTATATGGTTCAATAGATTCATTGTTTCCAAGAATTTGAGATG 8586063 Query 65269 TTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTT 65328 | ||||| || ||||| || || | ||||| ||| | |||||| | | | |||| Sbjct 8586062 TAGATGCTGTAGGCATTGGAGCAATTAATAATGAATTGCGAAGACCAAAACGTATAATTT 8586003 Query 65329 TATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTT 65388 | |||| | ||||| | ||| | ||| || | ||| | Sbjct 8586002 CTTGCTTTAAAATATCCCATTCCCATAAATCACTTGGAATAACATTCCACATATCATACT 8585943 Query 65389 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 65447 | ||||| || || || | | ||| | | |||| || || ||| | ||||| Sbjct 8585942 GAAGAATTCCTTTGGATGCTGGAGAATCTTTGA-ATGTTTCATAACATCCATACTTCTTT 8585884 Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 65507 | | |||||| || || | |||||| | |||||| ||||| || || || |||| Sbjct 8585883 GACAATTCACAGGAAGCTTCAAGTGCACCATGATAAATAGTTTCAAAAATTTTTATATTA 8585824 Query 65508 AGATCTTGTGCTTCCAG-GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 65566 ||||||| ||||| | | | | ||| ||||| | | || | ||| | || || | Sbjct 8585823 AGATCTTTAGCTTCTGGTGATGTGAAA-GGATACCTCATAAGCAAAAATGTATCAGCAAG 8585765 Query 65567 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 65626 ||||||||||||||| || || || | ||| | ||| || | ||||||| | Sbjct 8585764 TCCTTGAACACCAATTCCAATTGGACGATGCTTAAGATTTGATAAACGAGCTTCTTCTAG 8585705 Query 65627 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG---ACAATTACTTTGACCAC 65683 |||||| |||||||||| ||||||||||| | |||||| |||||| |||| | || Sbjct 8585704 TGGATAAAAATTAATATCAATAATTTTATTTAAATTTCTTGTTACAATT--TTTGTC-AC 8585648 Query 65684 ATCCTTCAGTTTGAGAAAATCAAATCGC---------TCATCTATTACAA---ACATGTT 65731 ||| | || | ||| |||||| || | ||| |||| |||| || Sbjct 8585647 ATCATGAAGCATTTTAAAGTCAAATGTAGGTTTTTTTTCTTTTATAACAACAAACATATT 8585588 Query 65732 CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 65791 | ||||| ||||| | ||||||||| || || || | | | |||||| || || Sbjct 8585587 AAGTGCAATTGATGCTAAATTACAAACAGCAACTTCGCTTGGAGAACAATATTGAATAAT 8585528 Query 65792 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 65851 ||||| || ||||| ||| | || ||||||||||||||||||||||| || || Sbjct 8585527 TTCAGTACATAGATTTGAACATCTAATCGTTCCTAAATTTTGTTGATTACTTTTACGATT 8585468 Query 65852 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 65911 ||| ||| ||||||| || ||||| |||||||||||||||||||||| ||| Sbjct 8585467 ACAATGATCTTTATAAACCATATATGGAATACCAGTTTCAATCTGAGATTCACAAATTTT 8585408 Query 65912 TTTCCAGACGACTCGAGCCTTTATTATAGATTT--GTATCTCTTTTCTCTTTCGTATAGT 65969 | ||| || | || ||| |||||| | ||| | | || ||||| |||| ||| Sbjct 8585407 CTGCCAAACAAATCTAGCTTTTATTT--GCTTTCGGAACCTTTTTTCATTTTCATATTTA 8585350 Query 65970 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 66029 |||| | | || || | || || || ||| || | || |||||||||| ||| Sbjct 8585349 ATATAAAGTTCATCAAATTTATCACCAAAACAATTATCAAGACCTGGACATTCATAAGGA 8585290 Query 66030 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 66089 ||||| || ||||| | || | | || ||||||||||| | ||| |||| |||| Sbjct 8585289 CACATTAATGACCAATGAAGATCCTGTTCAACACGTTTCATAAATAAATCTGGAACCCAA 8585230 Query 66090 AGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 66149 || | ||||||||| | | ||| ||| || ||||| || ||| | | ||| Sbjct 8585229 AGTCCATAAAATAAATCACGAGCTCTTGCTTCTTCTGGACCTGTGTTTTTTCTTAAATCT 8585170 Query 66150 AGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGT 66209 | || |||| |||||| |||||| ||||||||||| || || | | ||||| ||| Sbjct 8585169 AAAAATTCCATTATATCAGCATGCCATGGTTCCAAGTAGATTGCAAATGCCCCAGGTCGT 8585110 Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269 || || || |||||||| | || | ||| || |||||||||| | |||||||| || Sbjct 8585109 TTATTACCACCCTGATCAACATAACGAGCAGTACTATTATAAACACGTAACATTGGTATT 8585050 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329 | |||||| |||| ||||| || || | ||| | ||||| |||||||| | Sbjct 8585049 AAACCATTTGATGATCCATTTGTTCCTGCAATAAATGTTCCAGAAGCACGAATTCCAGAG 8584990 Query 66330 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 66389 || || || ||||| || || ||| || |||| || ||| |||| || || ||| Sbjct 8584989 ATACTTAATCCAATTCCTCCGGCAGATTTTGAAATTATAGCACATTGTTTCAAAGTGTCA 8584930 Query 66390 TAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTG 66448 || || || || ||| |||||| || |||||| || |||||| || | ||| Sbjct 8584929 TAAATTCCTTCAATAGAATCATCAGCCATTGTTAA-TAAAAAACATGACGATAATTGTGC 8584871 Query 66449 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 66508 |||| |||||| ||||||||||| || || ||||| || |||||||||||| ||| | Sbjct 8584870 ACGAGAAGTTCCTGCATTAAATAATGTTGGGGAAGCATGAATAAACCATTTTTTAGACA- 8584812 Query 66509 TAGAT-TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 66567 || || || ||||||||||| || | ||||| | ||||||| ||| || || | Sbjct 8584811 TATATAAATATGTCTCAATAGCAGAAGCAATATCTTCTCTATGAATTGCTATAGCTACTC 8584752 Query 66568 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATT 66627 |||||||||| | ||||||||||| || || || | || ||| | || || || ||| Sbjct 8584751 GCATTAACATATATTGAGGTCTTTCCACAATTTTATCATTGATTCTTAATAAATATGATC 8584692 Query 66628 TTTCCAAAGTTTTAAAACCAAAATA-GTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 66686 ||| | ||| |||| |||||||| || || |||| ||| ||| | |||||| Sbjct 8584691 GTTCTAGTGTTCTAAATCCAAAATATGTAAAATTAAAA-TCTTTTTCATTTTCAATAACT 8584633 Query 66687 GAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT--GAAATAATCG 66744 |||| ||||| || ||| | || || | ||| || | ||| | || | | Sbjct 8584632 GAGTCAAGTTTTATTGAATGTTTCTGAA-TAATTTCAT-TTATTTCTTTAGTTATCAAAG 8584575 Query 66745 GAGAATGTTTCCCATT---TTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCAC 66801 || |||||| || | ||| | || ||| || ||||||| | ||| |||||| Sbjct 8584574 GACAATGTTCACCTGTCACATTATGTTT---ATAATTATATAAATCATTCATAACTTCAG 8584518 Query 66802 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGG 66861 |||| ||||| |||| ||| || | ||||| | ||| || | ||| |||| | Sbjct 8584517 AAAATTTATTTTTAGTTTGTTTATGCAAATTTGTAATGGCAATACGAGCTGCTAATTTTT 8584458 Query 66862 CATAATCCGGATGTT 66876 ||||||| ||||||| Sbjct 8584457 CATAATCAGGATGTT 8584443 Score = 273 bits (302), Expect = 3e-68 Identities = 528/772 (68%), Gaps = 23/772 (3%) Strand=Plus/Minus Query 35843 TCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 35902 || ||| ||||||||| || | ||| || |||||| || ||| || || ||||| Sbjct 14764763 TCATCTGTAGACATAACACCGAATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTT 14764704 Query 35903 GTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtt 35962 ||||| || || | ||| ||||| |||| ||||| || || || |||||||||||| | Sbjct 14764703 GTTTTTCCCTCAATTGAAATATTAACCATAAAATCAAAGGGGTTCTTAACATTATAAAGT 14764644 Query 35963 tttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATC 36022 ||| | | | ||| | ||| || || ||| |||| |||||||| || | Sbjct 14764643 TTTGAACAATTAAGTTCCACCAACAAATGGTCAGCTACATATTCAATATATGTA--CA-C 14764587 Query 36023 ATTTCAC---AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGT 36079 ||| || | |||||||| || | | ||| |||||||| | ||||| |||| | | Sbjct 14764586 ATTAAACGTGAGTTCATTCCAATCATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTT 14764527 Query 36080 TCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGT--GGATACA 36137 |||||| || || | | | ||||| | ||| ||||||| ||| | | || Sbjct 14764526 TCAATATCAACTGCATTTTTAATAATTTCTTTTATACGTTCTTCAGATGGTTTGTTTTCA 14764467 Query 36138 A--TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAAT 36195 | ||| | |||||| | || |||||||| | ||||| ||||| ||||| ||| Sbjct 14764466 AGGTAACT----AAACATAAGGCAGGCGAAATCACGGTGTAATCCCTCATCTCTTGAAAT 14764411 Query 36196 TAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 36255 ||||| |||||| || | ||| ||||| | ||||| || || |||||||||||||| Sbjct 14764410 CAATTCATTGGAATGTGTCAATCCTGGCATCAAACCACGTTTCTTCAGCCAAAATATGGA 14764351 Query 36256 CGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 36315 |||||||| ||||||||||| || ||||| || || ||||| ||||||| || ||||| Sbjct 14764350 AGCAAATGAACCAGAAAAGAAGATACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCC 14764291 Query 36316 ATAACCGGCA---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACA 36372 | || ||| | ||| ||||| || ||||||||| || || ||| | | | | Sbjct 14764290 AAAAGTAGCATTCTTATCAGCGATCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAA 14764231 Query 36373 AGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGT 36432 || | |||| ||||||||| || | || |||| | | | || | ||| || Sbjct 14764230 TGGAAACTCATCTAAAGCATTAAAAAGTTTCATTCTTTCGTCATTGTCACGTATATAGGT 14764171 Query 36433 ATCAATCAAAAGACT---ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCC 36489 || || ||| | |||||| || ||||| ||||| ||||| ||||| || || Sbjct 14764170 TTCGAT---AAGTTTTGAATACATCTCACTGTGAATATTTTCCATGGCAATTTGGAAACC 14764114 Query 36490 GTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTC 36549 ||||| | | ||||||| ||| || |||||| || |||||| || | ||||| || Sbjct 14764113 ATAGAAGAAACGTGCCTCGGGAATTTGAACTTCTTTAGAAAATCTCTCGACCAAATTCTC 14764054 Query 36550 ATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 ||| || || || ||| || ||||| || || || ||| || |||||| Sbjct 14764053 ATTAACAATACCATCAGAAGCGGCAAAGAAAGCTAAGACACGTGAAATAAAA 14764002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171689333400