Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 315 7e-81 seq1 86.0 6e-12 >seq2 Length=16759152 Score = 315 bits (348), Expect = 7e-81 Identities = 546/789 (69%), Gaps = 10/789 (1%) Strand=Plus/Minus Query 13519 AAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCA 13578 ||| ||| ||||| |||| |||| ||||||| || || | |||| ||||| || | Sbjct 14764801 AAAGCTAGAAATCGGCATCCAATGTAAAAACACGTTCTTCATCTGTAGACATAACACCGA 14764742 Query 13579 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13638 ||| ||||||||| |||| |||| |||||||| || ||||| || || | ||| |||| Sbjct 14764741 ATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATAT 14764682 Query 13639 TTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAAT 13697 | ||||||||||||| || || || |||| | | | ||| |||| ||||| | Sbjct 14764681 TAACCATAAAATCAAAGGGGTTC-TTAACATTATAAAGTTTTGAACAATTAAGTTCCACC 14764623 Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 | || ||||| | | | ||||||||| | |||||||| | ||||| || || Sbjct 14764622 AACAAATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTTCATTCCAATC 14764563 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 | | ||||||| || || | |||| ||||| ||| || || | ||| ||| Sbjct 14764562 ATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAATA 14764503 Query 13818 ATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13877 || | | ||| || | ||| || | || || | |||| || | || || Sbjct 14764502 ATTTCTTTTATACGTTCTTCAGATGGTTTGTTTTCAAGGTAACTAAACATAAGGCAGGCG 14764443 Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937 ||||||| || | ||||||||||| ||| | ||| || ||| ||| ||||||||| Sbjct 14764442 AAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCAATCCTGGC 14764383 Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCC 13997 ||||| || ||||| || | ||||||||| | ||||||||| || |||||||| || || Sbjct 14764382 ATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGATACCT 14764323 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14057 ||||| || ||||| || || | |||||||||||| | || || || | | |||||| Sbjct 14764322 TCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTCTTATCAGCGATCCAT 14764263 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 || |||||| |||| ||||||| | ||||| | || | |||||||| ||| Sbjct 14764262 CTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCATTAA--AAA 14764205 Query 14118 TATTCCTTCTCTTTAGTACTTGAAATGTAT----GTATCAATAAGTAAGCTATACATTTC 14173 ||| | ||||| || ||| | |||| || || |||||| |||||| || Sbjct 14764204 GTTTCAT--TCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTTTGAATACATCTC 14764147 Query 14174 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTG 14233 | ||| || |||||||| || || || |||||||| ||| | | || || | ||| Sbjct 14764146 ACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGAATTTG 14764087 Query 14234 TACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14293 ||||| ||||||| ||| ||||||| |||||||| ||||||||| ||| ||||| Sbjct 14764086 AACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCGGCAAA 14764027 Query 14294 AAATGCCAA 14302 || || || Sbjct 14764026 GAAAGCTAA 14764018 >seq1 Length=11693564 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139047 TGGTGTTTTACATACAAAATTTTTAATTTCGGATGAGTTAAATGCATATATTGGAAGCGC 139106 ||||||||||||||||||||||| ||| ||| | | || |||||||| || || Sbjct 581597 TGGTGTTTTACATACAAAATTTTGGATTGTTGATCAAAAACATATTTATATTGGTAGTGC 581538 Query 139107 TAATATGGATTGGAGGTCTCTATCTCAAGTTAAAGAACTTGGTATAGGCATTTACAATTC 139166 ||||||||||||| || || || |||||||||| | ||| || || | |||| Sbjct 581537 AAATATGGATTGGAAATCATTAACTGAAGTTAAAGAGATGGGTGTATTAATAGAAAATTG 581478 Query 139167 TTCATGTTTGGTAATGGATTTAATAAAAATCTTTA 139201 ||| ||||| | | |||||| ||||| |||| Sbjct 581477 TTCTTGTTTAGCACATGATTTACATAAAATATTTA 581443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727190459000