Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq2 315 7e-81
seq1 86.0 6e-12
>seq2
Length=16759152
Score = 315 bits (348), Expect = 7e-81
Identities = 546/789 (69%), Gaps = 10/789 (1%)
Strand=Plus/Minus
Query 13519 AAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCA 13578
||| ||| ||||| |||| |||| ||||||| || || | |||| ||||| || |
Sbjct 14764801 AAAGCTAGAAATCGGCATCCAATGTAAAAACACGTTCTTCATCTGTAGACATAACACCGA 14764742
Query 13579 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13638
||| ||||||||| |||| |||| |||||||| || ||||| || || | ||| ||||
Sbjct 14764741 ATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATAT 14764682
Query 13639 TTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAAT 13697
| ||||||||||||| || || || |||| | | | ||| |||| ||||| |
Sbjct 14764681 TAACCATAAAATCAAAGGGGTTC-TTAACATTATAAAGTTTTGAACAATTAAGTTCCACC 14764623
Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757
| || ||||| | | | ||||||||| | |||||||| | ||||| || ||
Sbjct 14764622 AACAAATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTTCATTCCAATC 14764563
Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817
| | ||||||| || || | |||| ||||| ||| || || | ||| |||
Sbjct 14764562 ATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAATA 14764503
Query 13818 ATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13877
|| | | ||| || | ||| || | || || | |||| || | || ||
Sbjct 14764502 ATTTCTTTTATACGTTCTTCAGATGGTTTGTTTTCAAGGTAACTAAACATAAGGCAGGCG 14764443
Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937
||||||| || | ||||||||||| ||| | ||| || ||| ||| |||||||||
Sbjct 14764442 AAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCAATCCTGGC 14764383
Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCC 13997
||||| || ||||| || | ||||||||| | ||||||||| || |||||||| || ||
Sbjct 14764382 ATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGATACCT 14764323
Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14057
||||| || ||||| || || | |||||||||||| | || || || | | ||||||
Sbjct 14764322 TCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTCTTATCAGCGATCCAT 14764263
Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117
|| |||||| |||| ||||||| | ||||| | || | |||||||| |||
Sbjct 14764262 CTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCATTAA--AAA 14764205
Query 14118 TATTCCTTCTCTTTAGTACTTGAAATGTAT----GTATCAATAAGTAAGCTATACATTTC 14173
||| | ||||| || ||| | |||| || || |||||| |||||| ||
Sbjct 14764204 GTTTCAT--TCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTTTGAATACATCTC 14764147
Query 14174 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTG 14233
| ||| || |||||||| || || || |||||||| ||| | | || || | |||
Sbjct 14764146 ACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGAATTTG 14764087
Query 14234 TACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14293
||||| ||||||| ||| ||||||| |||||||| ||||||||| ||| |||||
Sbjct 14764086 AACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCGGCAAA 14764027
Query 14294 AAATGCCAA 14302
|| || ||
Sbjct 14764026 GAAAGCTAA 14764018
>seq1
Length=11693564
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 139047 TGGTGTTTTACATACAAAATTTTTAATTTCGGATGAGTTAAATGCATATATTGGAAGCGC 139106
||||||||||||||||||||||| ||| ||| | | || |||||||| || ||
Sbjct 581597 TGGTGTTTTACATACAAAATTTTGGATTGTTGATCAAAAACATATTTATATTGGTAGTGC 581538
Query 139107 TAATATGGATTGGAGGTCTCTATCTCAAGTTAAAGAACTTGGTATAGGCATTTACAATTC 139166
||||||||||||| || || || |||||||||| | ||| || || | ||||
Sbjct 581537 AAATATGGATTGGAAATCATTAACTGAAGTTAAAGAGATGGGTGTATTAATAGAAAATTG 581478
Query 139167 TTCATGTTTGGTAATGGATTTAATAAAAATCTTTA 139201
||| ||||| | | |||||| ||||| ||||
Sbjct 581477 TTCTTGTTTAGCACATGATTTACATAAAATATTTA 581443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479727190459000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |