Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 273 2e-68 >seq2 Length=16759152 Score = 273 bits (302), Expect = 2e-68 Identities = 537/789 (68%), Gaps = 10/789 (1%) Strand=Plus/Minus Query 13307 AAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCA 13366 ||| ||| ||||| |||| |||| ||||||| || || | |||| ||||| || | Sbjct 14764801 AAAGCTAGAAATCGGCATCCAATGTAAAAACACGTTCTTCATCTGTAGACATAACACCGA 14764742 Query 13367 TTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATAT 13426 ||| ||||||||| |||| |||| ||||| || || ||||| || || | ||| |||| Sbjct 14764741 ATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCCTCAATTGAAATAT 14764682 Query 13427 TTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAAT 13485 | |||||||||| || || || || |||| | | | ||| |||| ||||| | Sbjct 14764681 TAACCATAAAATCAAAGGGGTTC-TTAACATTATAAAGTTTTGAACAATTAAGTTCCACC 14764623 Query 13486 AATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13545 || || ||||| | | | ||||||||| | |||||||| | ||||| || || Sbjct 14764622 AACAAATGGTCAGCTACATATTCAATATATGTACACATTAAACGTGAGTTCATTCCAATC 14764563 Query 13546 AGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 13605 | | ||||||| || || | |||| ||||| ||| || || | || ||| Sbjct 14764562 ATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCAACTGCATTTTTAATA 14764503 Query 13606 ATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13665 || || ||| || | ||| || | || || | |||| || | || || Sbjct 14764502 ATTTCTTTTATACGTTCTTCAGATGGTTTGTTTTCAAGGTAACTAAACATAAGGCAGGCG 14764443 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 ||||||| || | ||||||||||| ||| | ||| || ||| ||| ||||||||| Sbjct 14764442 AAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGAATGTGTCAATCCTGGC 14764383 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 ||||| || ||||| || | ||||||||| | ||| ||||| || |||||||| || || Sbjct 14764382 ATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACCAGAAAAGAAGATACCT 14764323 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCAT 13845 ||||| || ||||| || || | |||||||||||| | || || || | | |||||| Sbjct 14764322 TCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATTCTTATCAGCGATCCAT 14764263 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 || |||||| |||| ||||||| | ||||| | || | ||||| || | Sbjct 14764262 CTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATCTAAAGCATTAAAAA-- 14764205 Query 13906 TGTTCCTTCTCTTTAGTACTTGAAATGTATGTA----TCAATAAGTAAGCTATACATTTC 13961 ||| | | ||||| || ||| | |||| || || |||||| |||||| || Sbjct 14764204 -GTTTCAT-TCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTTTGAATACATCTC 14764147 Query 13962 AGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14021 | ||| || ||||| || || || || |||||||| || | | || || | ||| Sbjct 14764146 ACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGCCTCGGGAATTTG 14764087 Query 14022 TACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAA 14081 || || ||||||| || |||| || |||||||||||||||||| ||| ||||| Sbjct 14764086 AACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATCAGAAGCGGCAAA 14764027 Query 14082 AAATGCCAA 14090 || || || Sbjct 14764026 GAAAGCTAA 14764018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587992381400