Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq2 105 5e-18
>seq2
Length=16759152
Score = 105 bits (116), Expect = 5e-18
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||| || | | |||||||||| ||| |||||||| | ||| || || ||
Sbjct 10681828 CCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10681769
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || | | | || || | |||||| || |||||||| |||| ||||||||| | ||
Sbjct 10681768 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGA 10681709
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCT---TTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059
| |||||||| || ||| | || | ||||| || ||| |||||| || |||
Sbjct 10681708 ATTCCTTCTTTGTCT-TGA--ATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCT 10681652
Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| || | || |||||||| || || | ||| || || |||||||||||
Sbjct 10681651 ACCTCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||| || | | |||||||| | ||| || ||||| | |||||| || ||
Sbjct 10682284 CCTCCACGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAG 10682225
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || | | | || || | |||||| |||||||| ||||||| |||||||| | ||
Sbjct 10682224 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGA 10682165
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||| || || || |||||| || ||| |||||| | || ||
Sbjct 10682164 ATTCCTTCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACT 10682105
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || ||||| ||||| |||| ||| || ||||||||||||||
Sbjct 10682104 TCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||| || | | |||||||| | ||| |||||||| | ||| || || ||
Sbjct 10683196 CCTCCACGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10683137
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || | | | || || | |||||| |||||||| ||||||| |||||||| | ||
Sbjct 10683136 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 10683077
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||| || || ||| ||| || || | | |||||| | || ||
Sbjct 10683076 ATTCCTTCCTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACT 10683017
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || ||||| ||||| |||| ||| || ||||||||||||||
Sbjct 10683016 TCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381368972527830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |