Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1 136 4e-27 seq2 123 3e-23 >seq1 Length=11693564 Score = 136 bits (150), Expect = 4e-27 Identities = 477/738 (65%), Gaps = 35/738 (5%) Strand=Plus/Plus Query 156871 AAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAttt 156930 ||||||||| || ||||| |||| ||||| || || ||||| || | |||||| ||||| Sbjct 6013869 AAATGCATCAGCTAAACCCTGAACACCAATACCAATTGGACGGTGTCTCATATTTGATTT 6013928 Query 156931 ttttGCAGTTTCA---ATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCAC 156987 | | || |||| | ||| || ||||| ||||||||||||||||||| | | Sbjct 6013929 TCTGGC---TTCAGGGACAGGATAATAATTGACATCAATAATTTTATTCAAATTTTTAGT 6013985 Query 156988 TACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAG------TATCAT-TA---- 157036 || | ||| ||| || | | ||| |||| ||||| || ||| || Sbjct 6013986 TAGAATTTTAGAAACAACATGAAGTTGTTTGAAATTAAAAGCAGGTTTACCATCTACAAC 6014045 Query 157037 -TTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGC 157095 | | | || |||| | ||||| || ||||||||||||| ||| ||| || || || Sbjct 6014046 TTCAACAAATCTATTAAGAGCAATAGATCCTAGATTACATACAGCAACTTCATCTGGTGC 6014105 Query 157096 GCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTG 157155 ||||||| || ||||| | ||| ||||| ||||| || ||| ||| ||| Sbjct 6014106 ACAATATTCAACAATTTCAGTACATAAATTTGAACATTTAATGGTTCCAAGATTTTGTTG 6014165 Query 157156 ATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTG 157215 ||| ||||| || || ||| || ||||| | ||| || ||||| |||||||| ||| Sbjct 6014166 ATTACTTTTACGATTACAATGATCTTTGTAAACCATATAAGGTGTTCCGGTTTCAATTTG 6014225 Query 157216 AATTTCTATGATGTTGCGCATTAATGTAACCGCGGGC---ATTTGCTCGC-GAAACTGGC 157271 | |||| || || || | |||| || | ||||| | | | || | Sbjct 6014226 ACTTTCACAAATCTTTTGC---CAAATAACTCTGGCCTTTATTTGTTTTCTGTAA----C 6014278 Query 157272 CTTTATCCTCGTAATGTTTG---TACCAGTATTCAAAGTCATCACCATACGTATCGTTGA 157328 ||| || | | || ||| || | | ||||| | ||||| | ||||| | | Sbjct 6014279 GTTTCTCATTTTCATACTTGTGATATAATTCCTCAAAAGCCTCACCCCAAGTATCCTCAA 6014338 Query 157329 GCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCA 157388 | |||||| |||| || ||||| || ||||| | || || || || ||||||| Sbjct 6014339 GTCCAGGACATTCGTGGGGGCACATCAAAGACCAATAAGAGTCTTTCTCTACACGTTTCA 6014398 Query 157389 TAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGC 157448 |||||| ||| |||| ||| | | | | | |||||||| ||| | ||||| || Sbjct 6014399 TAAATAAATCAGGAATCCAAAGACCATAAAATAAATCACGAGCTCTTTCTTCTTCAGGGC 6014458 Query 157449 CAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACA 157508 | | ||| | | |||| || | |||||| |||||| ||||| | || | Sbjct 6014459 CTGTATTTTTCTTAAGATCCAAAAATTCTAAAATGTCAGCATGCCATGGTTCTAGATATA 6014518 Query 157509 CTGCTTGGGCTCC---TTTTCGCTTGCCACCTTGATCCACGTGACGCACCATATTATTAA 157565 || ||||| | || || || ||||| || || | || | |||| |||| Sbjct 6014519 TAGCAAATGCTCCAGGTCTTTTATTTCCCCCTTGGTCAACATAGCGTGCTGTATTGTTAA 6014578 Query 157566 AAACTCGCAGCATTGGTA 157583 |||||| || |||||||| Sbjct 6014579 AAACTCTCAACATTGGTA 6014596 >seq2 Length=16759152 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||| ||||||| |||||||||||||| || ||||| || Sbjct 10682284 CCTCCACGAAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAG 10682225 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| |||||||| || ||| |||||| | ||| ||||| || || Sbjct 10682224 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGA 10682165 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||||||| ||| | | || | ||||| | ||||||||| Sbjct 10682164 ATTCCTTCCTTATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACT 10682105 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | ||||| || || || || || || || ||||||||| || Sbjct 10682104 TCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCATACCT 10682054 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||| ||||||| || ||||| ||||| || || || || Sbjct 10683196 CCTCCACGAAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10683137 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| |||||||| || ||| |||||| | ||| ||||| ||||| Sbjct 10683136 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 10683077 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| ||| ||| | | || | ||||| | ||||||||| Sbjct 10683076 ATTCCTTCCTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACT 10683017 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | ||||| || || || || || || || ||||||||| || Sbjct 10683016 TCAAGAGTAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCATACCT 10682966 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | |||||| |||| || || |||||||| ||||||||||| Sbjct 10682056 CCTCCACGAAGACGAAGAACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAA 10681997 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| |||||||| |||||| | || | | ||| || || ||||| Sbjct 10681996 AGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGG 10681937 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||||||| ||| | | || | ||||| | ||||| ||| Sbjct 10681936 ATTCCTTCCTTATCTTGAATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACT 10681877 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | || || || || || || || || || || |||||| || Sbjct 10681876 TCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCATACCT 10681826 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||| ||||| | || ||||| ||||| || || || || Sbjct 10682740 CCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10682681 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| |||||||| |||||| | || | | ||| ||||| ||||| Sbjct 10682680 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGA 10682621 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| ||| ||| | | || | ||||| | |||||||| Sbjct 10682620 ATTCCTTCTTTGTCTTGAATCTTTGATTTAACATTGTCGATGGTGTCGGATGGTTCTACC 10682561 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | ||||| || ||||| || || ||||| || |||||| || Sbjct 10682560 TCGAGAGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCATACCT 10682510 Score = 100 bits (110), Expect = 3e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||| ||||| | || ||||| ||||| || || || || Sbjct 10681828 CCTCCACGAAGACGAAGAACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAA 10681769 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| |||||||| |||||| | || | | || ||||| ||||| Sbjct 10681768 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGA 10681709 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| ||| || | | || | ||||| | || ||||| Sbjct 10681708 ATTCCTTCTTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACC 10681649 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTT 143195 |||| ||| | || ||||| ||||| || || ||||| |||||||| | | | |||| Sbjct 10681648 TCAAGAGTGATAGTTTTGCCTGTCAAAGTCTTAACGAAAATTTGCATGGTTAAAGTTT 10681591 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||| ||||||| || || |||||||| ||||||||||| Sbjct 10683424 CCTCCACGAAGACGGAGAACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAA 10683365 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || || ||||| || || ||| | || | | ||| ||||| ||||| Sbjct 10683364 AGTGTTCTTCCATCCTCAAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGG 10683305 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| ||| ||| | | || | ||||| | ||||| ||| Sbjct 10683304 ATTCCTTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACT 10683245 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | || || || || || || || || || || |||||| || Sbjct 10683244 TCAAGAGTAATGGTTTTACCTGTTAAGGTCTTAACAAAAATCTGCATACCT 10683194 Score = 91.5 bits (100), Expect = 1e-13 Identities = 462/734 (63%), Gaps = 27/734 (4%) Strand=Plus/Minus Query 156871 AAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAttt 156930 ||||| ||| || | ||||||| ||||| || || |||||||| | ||| ||| Sbjct 8585779 AAATGTATCAGCAAGTCCTTGAACACCAATTCCAATTGGACGATGCTTAAGATTTGATAA 8585720 Query 156931 ttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTAC 156990 || ||| | || || ||||| ||||||||||||||| ||| | ||| Sbjct 8585719 ACGAGCTTCTTCTAGTGGATAAAAATTAATATCAATAATTTTATTTAAATTTCTTGTTAC 8585660 Query 156991 ATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTA--TCATTATTGATATATT-- 157046 | ||| |||| || | | || ||| ||||| ||| | || || | ||| Sbjct 8585659 AATTTTTGTCACATCATGAAGCATTTTAAAGTCAAATGTAGGTTTTTTTTCTTTTATAAC 8585600 Query 157047 --------TATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCA 157098 |||| | ||||| || |||| |||||| || ||| |||| || | || Sbjct 8585599 AACAAACATATTAAGTGCAATTGATGCTAAATTACAAACAGCAACTTCGCTTGGAGAACA 8585540 Query 157099 ATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATT 157158 |||||| | ||||| | ||| | ||| ||| | ||| ||| |||| |||||| Sbjct 8585539 ATATTGAATAATTTCAGTACATAGATTTGAACATCTAATCGTTCCTAAATTTTGTTGATT 8585480 Query 157159 GCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAAT 157218 ||||| || || ||| || || || | ||| || || | || ||||| ||| Sbjct 8585479 ACTTTTACGATTACAATGATCTTTATAAACCATATATGGAATACCAGTTTCAATCTGAGA 8585420 Query 157219 TTCTATGATGTTGCGC---ATTAATGTAACCGCGGGCATTTGCTCGCGAAACTGGCCTTT 157275 ||| || || || | ||| || || ||||||| || ||| | ||| Sbjct 8585419 TTCACAAATTTTCTGCCAAACAAATCTA---GCTTTTATTTGCTTTCGGAAC---CTTTT 8585366 Query 157276 ATCCTCGTAATGTTTG---TACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTT 157332 || | | || ||| || | ||||| | ||||||| | || | || Sbjct 8585365 TTCATTTTCATATTTAATATAAAGTTCATCAAATTTATCACCAAAACAATTATCAAGACC 8585306 Query 157333 AGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAA 157392 ||||| || | |||||||||||||||||| | | | |||||| ||||||||||| Sbjct 8585305 TGGACATTCATAAGGACACATTAATGACCAATGAAGATCCTGTTCAACACGTTTCATAAA 8585246 Query 157393 TATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAAT 157452 || ||| |||||||| | | | | |||||||| ||| | | ||||| || | Sbjct 8585245 TAAATCTGGAACCCAAAGTCCATAAAATAAATCACGAGCTCTTGCTTCTTCTGGACCTGT 8585186 Query 157453 GTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGC 157512 |||| | | | ||||| ||||| || || |||||| ||||| | ||| | ||| Sbjct 8585185 GTTTTTTCTTAAATCTAAAAATTCCATTATATCAGCATGCCATGGTTCCAAGTAGATTGC 8585126 Query 157513 TTGGGCTCCTTTTCG---CTTGCCACCTTGATCCACGTGACGCACCATATTATTAAAAAC 157569 || || ||| || ||||| ||||| || | ||| | || ||||| |||| Sbjct 8585125 AAATGCCCCAGGTCGTTTATTACCACCCTGATCAACATAACGAGCAGTACTATTATAAAC 8585066 Query 157570 TCGCAGCATTGGTA 157583 || | |||||||| Sbjct 8585065 ACGTAACATTGGTA 8585052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013544413200