Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 1e-15 >seq2 Length=16759152 Score = 98.7 bits (108), Expect = 1e-15 Identities = 309/469 (66%), Gaps = 10/469 (2%) Strand=Plus/Plus Query 125110 TGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATG 125169 |||| || | |||||| ||||| || | | || || |||||||||| || |||| Sbjct 14763983 TGACAGACAATGAGCGTTTTTTTATTTCACGTGTCTTAGCTTTCTTTGCCGCTTCTGATG 14764042 Query 125170 GAATCGTCAACGACAATCTGTT-GACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGT 125227 | || || || || ||| || | || | |||| ||| |||| ||| | ||||| |||| Sbjct 14764043 GTATTGTTAATGAGAATTTGGTCGAGA-GATTTTCTAAAGAAGTTCAA-ATTCCCGAGGC 14764100 Query 125228 GTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 | ||| || || |||||||| || || || | ||| || ||||| || | Sbjct 14764101 ACGTTTCTTCTATGGTTTCCAAATTGCCATGGAAAATATTCACAGTGAGATGTATTCAAA 14764160 Query 125288 ACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATG---CTCTTTAACGCAAT 125344 ||| || || | || || || || | ||| ||| | ||| || ||||| || | Sbjct 14764161 ACTTATCGAAACCTATATACGTGA-CAATGACG-AAAGA-ATGAAACTTTTTAATGCTTT 14764217 Query 125345 CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA 125404 || | | || | ||| | ||||| ||| | |||| | | ||||||| ||| | Sbjct 14764218 AGATGAGTTTCCATTTATCAGAAAAAAAGCTGATTGGGCTTTAAGATGGATCGCTGATAA 14764277 Query 125405 CAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC 125464 || || | | | || || | | || || || || || || || ||||||||||| Sbjct 14764278 GAATGCTACTTTTGGAGAACGAGTTATTGCTTTTGCAGCTGTTGAAGGTATCTTCTTTTC 14764337 Query 125465 GGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 ||| ||||| |||| |||||||| ||||| || || | ||||| ||| |||| || Sbjct 14764338 TGGTTCATTTGCTTCCATATTTTGGCTGAAGAAACGTGGTTTGATGCCAGGATTGACACA 14764397 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 || || || || || |||| ||||| ||||| |||| || ||| Sbjct 14764398 TTCCAATGAATTGATTTCAAGAGATGAGGGATTACACCGTGATTTCGCC 14764446 Score = 89.7 bits (98), Expect = 8e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || |||||||| || || || | || ||||||||||||| ||||| || || Sbjct 8585096 CAGGGTGGTAATAAACGACCTGGGGCATTTGCAATCTACTTGGAACCATGGCATGCTGAT 8585155 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 | | || ||| | || | | |||||| | || ||||| ||| |||| | || Sbjct 8585156 ATAATGGAATTTTTAGATTTAAGAAAAAACACAGGTCCAGAAGAAGCAAGAGCTCGTGAT 8585215 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT 97039 || ||||||| ||| ||||| |||||||| || ||||| || || Sbjct 8585216 TTATTTTATGGACTTTGGGTTCCAGATTTATTTATGAAACGTGT 8585259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057949462600