Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2 98.7 1e-15
>seq2
Length=16759152
Score = 98.7 bits (108), Expect = 1e-15
Identities = 309/469 (66%), Gaps = 10/469 (2%)
Strand=Plus/Plus
Query 125110 TGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATG 125169
|||| || | |||||| ||||| || | | || || |||||||||| || ||||
Sbjct 14763983 TGACAGACAATGAGCGTTTTTTTATTTCACGTGTCTTAGCTTTCTTTGCCGCTTCTGATG 14764042
Query 125170 GAATCGTCAACGACAATCTGTT-GACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGT 125227
| || || || || ||| || | || | |||| ||| |||| ||| | ||||| ||||
Sbjct 14764043 GTATTGTTAATGAGAATTTGGTCGAGA-GATTTTCTAAAGAAGTTCAA-ATTCCCGAGGC 14764100
Query 125228 GTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287
| ||| || || |||||||| || || || | ||| || ||||| || |
Sbjct 14764101 ACGTTTCTTCTATGGTTTCCAAATTGCCATGGAAAATATTCACAGTGAGATGTATTCAAA 14764160
Query 125288 ACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATG---CTCTTTAACGCAAT 125344
||| || || | || || || || | ||| ||| | ||| || ||||| || |
Sbjct 14764161 ACTTATCGAAACCTATATACGTGA-CAATGACG-AAAGA-ATGAAACTTTTTAATGCTTT 14764217
Query 125345 CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA 125404
|| | | || | ||| | ||||| ||| | |||| | | ||||||| ||| |
Sbjct 14764218 AGATGAGTTTCCATTTATCAGAAAAAAAGCTGATTGGGCTTTAAGATGGATCGCTGATAA 14764277
Query 125405 CAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC 125464
|| || | | | || || | | || || || || || || || |||||||||||
Sbjct 14764278 GAATGCTACTTTTGGAGAACGAGTTATTGCTTTTGCAGCTGTTGAAGGTATCTTCTTTTC 14764337
Query 125465 GGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524
||| ||||| |||| |||||||| ||||| || || | ||||| ||| |||| ||
Sbjct 14764338 TGGTTCATTTGCTTCCATATTTTGGCTGAAGAAACGTGGTTTGATGCCAGGATTGACACA 14764397
Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573
|| || || || || |||| ||||| ||||| |||| || |||
Sbjct 14764398 TTCCAATGAATTGATTTCAAGAGATGAGGGATTACACCGTGATTTCGCC 14764446
Score = 89.7 bits (98), Expect = 8e-13
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| || |||||||| || || || | || ||||||||||||| ||||| || ||
Sbjct 8585096 CAGGGTGGTAATAAACGACCTGGGGCATTTGCAATCTACTTGGAACCATGGCATGCTGAT 8585155
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
| | || ||| | || | | |||||| | || ||||| ||| |||| | ||
Sbjct 8585156 ATAATGGAATTTTTAGATTTAAGAAAAAACACAGGTCCAGAAGAAGCAAGAGCTCGTGAT 8585215
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT 97039
|| ||||||| ||| ||||| |||||||| || ||||| || ||
Sbjct 8585216 TTATTTTATGGACTTTGGGTTCCAGATTTATTTATGAAACGTGT 8585259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741057949462600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |