Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2 120 2e-22 >seq2 Length=16759152 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| || || |||||||| || ||||| || ||| |||| | ||||| Sbjct 10682267 AACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTC 10682208 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| || || | ||||| | |||||| || |||||||||||| || || Sbjct 10682207 AAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTG 10682148 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| || ||| | || ||||| ||| |||||| || | ||||| || || Sbjct 10682147 AATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTT 10682088 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| | ||| || ||||||||||||||| Sbjct 10682087 TCCTGTTAAAGTCTTGACAAAAATTTGCATA 10682057 Score = 114 bits (126), Expect = 9e-21 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 |||||| ||||| || || |||||||| || |||||||| ||| |||| | ||||| Sbjct 10682951 AACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTC 10682892 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| ||||| | || || | ||||||||| ||||||||||| || || Sbjct 10682891 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTG 10682832 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || |||| | || ||| | || ||||| || | ||| || || | ||||| |||| Sbjct 10682831 GATCTTTGAT-TTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTT 10682773 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||| | || || |||||||| |||||| Sbjct 10682772 TACCTGTTAAGGTCTTAACAAAAATCTGCATA 10682741 Score = 109 bits (120), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| || || || ||||| || || || || ||| |||| | ||||| Sbjct 10683179 AACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTC 10683120 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| || || | ||||| | |||||| || ||||||||||| ||||| Sbjct 10683119 AAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTG 10683060 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| |||| | || ||| | || ||||| ||| |||||| || | ||||| || | Sbjct 10683059 AATCTTTGAT-TTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCT 10683001 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||| | ||| || ||||||||||||||| Sbjct 10683000 TTCCTGTTAAAGTCTTGACAAAAATTTGCATA 10682969 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 |||||| ||||| || || |||||||| ||||||||||| ||| | || | ||||| Sbjct 10682039 AACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTC 10681980 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| ||||| | || || | ||||||||| || |||||||| || || Sbjct 10681979 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTG 10681920 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| || || | || || || || ||| || || | ||||| ||||| Sbjct 10681919 AATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTT 10681860 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| | || || |||||||| |||||| Sbjct 10681859 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10681829 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || || ||||| || || || || ||| |||| | ||||| Sbjct 10681811 AACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTC 10681752 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| ||||| | || || | ||||| || ||||||||||||||||| Sbjct 10681751 AAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG 10681692 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| ||| | || || || ||| | ||||| || | || || ||||| Sbjct 10681691 AATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTT 10681632 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| ||| || || ||||||||||| Sbjct 10681631 GCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || || ||||| || || || || ||| |||| | ||||| Sbjct 10682723 AACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTC 10682664 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| ||||| | || || | |||||| || ||||||||||||||||| Sbjct 10682663 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG 10682604 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| |||| | || ||| | || ||||| ||| |||||| || | || ||||| | Sbjct 10682603 AATCTTTGAT-TTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGTCT 10682545 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || |||| ||| || || ||||| |||||| Sbjct 10682544 TTCCAGTCAAAGTCTTAACGAAAATCTGCATA 10682513 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| || || |||||||| ||||||||||| || |||| | || || Sbjct 10683407 AACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATCCTC 10683348 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || || | || || | |||||| || || |||||||| || || Sbjct 10683347 AAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTTG 10683288 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| |||| | || ||| | || || || || ||| || || | |||||||||| Sbjct 10683287 AATCTTTGAT-TTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTT 10683229 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||| | || || |||||||| |||||| Sbjct 10683228 TACCTGTTAAGGTCTTAACAAAAATCTGCATA 10683197 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 |||||| ||||| || || || ||||| || ||||| || ||| |||| | ||||| Sbjct 10682495 AACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTC 10682436 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| || || | || || | |||||| || ||||||||||| || || Sbjct 10682435 AAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTG 10682376 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| || | || || || || ||| || || | ||||| ||||| Sbjct 10682375 AATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTT 10682316 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| | || || |||||||| |||||| Sbjct 10682315 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10682285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178604102035