Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq2 120 2e-22
>seq2
Length=16759152
Score = 120 bits (132), Expect = 2e-22
Identities = 153/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| |||||||| || || |||||||| || ||||| || ||| |||| | |||||
Sbjct 10682267 AACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTC 10682208
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| |||||| || || | ||||| | |||||| || |||||||||||| || ||
Sbjct 10682207 AAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTG 10682148
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|||||| || ||| | || ||||| ||| |||||| || | ||||| || ||
Sbjct 10682147 AATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTT 10682088
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
||||| | ||| || |||||||||||||||
Sbjct 10682087 TCCTGTTAAAGTCTTGACAAAAATTTGCATA 10682057
Score = 114 bits (126), Expect = 9e-21
Identities = 154/212 (73%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
|||||| ||||| || || |||||||| || |||||||| ||| |||| | |||||
Sbjct 10682951 AACTAAGTGAAGAGTTGACTCTTTTTGGATATTGTAATCAGAGAGAGTTCTTCCATCTTC 10682892
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| |||||| ||||| | || || | ||||||||| ||||||||||| || ||
Sbjct 10682891 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTG 10682832
Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
|| |||| | || ||| | || ||||| || | ||| || || | ||||| ||||
Sbjct 10682831 GATCTTTGAT-TTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTT 10682773
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
||||||| | || || |||||||| ||||||
Sbjct 10682772 TACCTGTTAAGGTCTTAACAAAAATCTGCATA 10682741
Score = 109 bits (120), Expect = 4e-19
Identities = 153/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| |||||||| || || || ||||| || || || || ||| |||| | |||||
Sbjct 10683179 AACCAAATGAAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTC 10683120
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| |||||| || || | ||||| | |||||| || ||||||||||| |||||
Sbjct 10683119 AAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTG 10683060
Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
||| |||| | || ||| | || ||||| ||| |||||| || | ||||| || |
Sbjct 10683059 AATCTTTGAT-TTAACATTGTCGATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCT 10683001
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
| ||||| | ||| || |||||||||||||||
Sbjct 10683000 TTCCTGTTAAAGTCTTGACAAAAATTTGCATA 10682969
Score = 102 bits (112), Expect = 6e-17
Identities = 149/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
|||||| ||||| || || |||||||| ||||||||||| ||| | || | |||||
Sbjct 10682039 AACTAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGAGTCCTTCCATCTTC 10681980
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| |||||| ||||| | || || | ||||||||| || |||||||| || ||
Sbjct 10681979 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTG 10681920
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|||||| || || | || || || || ||| || || | ||||| |||||
Sbjct 10681919 AATTTTTGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTT 10681860
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|||||| | || || |||||||| ||||||
Sbjct 10681859 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10681829
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| ||||| || || || || ||||| || || || || ||| |||| | |||||
Sbjct 10681811 AACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTC 10681752
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| |||||| ||||| | || || | ||||| || |||||||||||||||||
Sbjct 10681751 AAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG 10681692
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||| || ||| ||| | || || || ||| | ||||| || | || || |||||
Sbjct 10681691 AATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTT 10681632
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||||| ||| || || |||||||||||
Sbjct 10681631 GCCTGTCAAAGTCTTAACGAAAATTTGCAT 10681602
Score = 100 bits (110), Expect = 2e-16
Identities = 151/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| ||||| || || || || ||||| || || || || ||| |||| | |||||
Sbjct 10682723 AACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTC 10682664
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| |||||| ||||| | || || | |||||| || |||||||||||||||||
Sbjct 10682663 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG 10682604
Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
||| |||| | || ||| | || ||||| ||| |||||| || | || ||||| |
Sbjct 10682603 AATCTTTGAT-TTAACATTGTCGATGGTGTCGGATGGTTCTACCTCGAGAGTGATGGTCT 10682545
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
| || |||| ||| || || ||||| ||||||
Sbjct 10682544 TTCCAGTCAAAGTCTTAACGAAAATCTGCATA 10682513
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| |||||||| || || |||||||| ||||||||||| || |||| | || ||
Sbjct 10683407 AACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATCCTC 10683348
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| ||| || || || | || || | |||||| || || |||||||| || ||
Sbjct 10683347 AAGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTTG 10683288
Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
||| |||| | || ||| | || || || || ||| || || | ||||||||||
Sbjct 10683287 AATCTTTGAT-TTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTT 10683229
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
||||||| | || || |||||||| ||||||
Sbjct 10683228 TACCTGTTAAGGTCTTAACAAAAATCTGCATA 10683197
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
|||||| ||||| || || || ||||| || ||||| || ||| |||| | |||||
Sbjct 10682495 AACTAAGTGAAGAGTTGACTCCTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTC 10682436
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| |||||| || || | || || | |||||| || ||||||||||| || ||
Sbjct 10682435 AAGTTGTTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTG 10682376
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||| || ||| || | || || || || ||| || || | ||||| |||||
Sbjct 10682375 AATCTTTGACTTAACGTTGTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTT 10682316
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|||||| | || || |||||||| ||||||
Sbjct 10682315 ACCTGTTAAGGTCTTAACAAAAATCTGCATA 10682285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362178604102035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |