Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 5e-11 >seq2 Length=16759152 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGT-CATC--CAA-TTGCTT 33228 || ||||||||||| |||||||||||||| | ||||| | |||| ||| ||| || Sbjct 10682938 GTTGACTCTTTTTGGATATTGTAATCAGAGA----GAGTTCTTCCATCTTCAAGTTGTTT 10682883 Query 33229 TCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTG 33288 |||| ||| ||||| | ||| ||||| | || || ||||| || || ||| Sbjct 10682882 TCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTTGA 10682823 Query 33289 TTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAG 33348 ||| || | | ||| ||||| |||| ||| || ||||| || ||||| || || | Sbjct 10682822 TTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAA 10682763 Query 33349 AGTTTTTACGAAAATTTGCAT 33369 || || || ||||| ||||| Sbjct 10682762 GGTCTTAACAAAAATCTGCAT 10682742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777075511230