Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq2 82.4 5e-11
>seq2
Length=16759152
Score = 82.4 bits (90), Expect = 5e-11
Identities = 141/201 (70%), Gaps = 8/201 (4%)
Strand=Plus/Minus
Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGT-CATC--CAA-TTGCTT 33228
|| ||||||||||| |||||||||||||| | ||||| | |||| ||| ||| ||
Sbjct 10682938 GTTGACTCTTTTTGGATATTGTAATCAGAGA----GAGTTCTTCCATCTTCAAGTTGTTT 10682883
Query 33229 TCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTG 33288
|||| ||| ||||| | ||| ||||| | || || ||||| || || |||
Sbjct 10682882 TCCAGCAAAAATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTTGA 10682823
Query 33289 TTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAG 33348
||| || | | ||| ||||| |||| ||| || ||||| || ||||| || || |
Sbjct 10682822 TTTGACATTGTCAATGGTGTCAGAAGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAA 10682763
Query 33349 AGTTTTTACGAAAATTTGCAT 33369
|| || || ||||| |||||
Sbjct 10682762 GGTCTTAACAAAAATCTGCAT 10682742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318777075511230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |