Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq2 107 1e-18 >seq2 Length=16759152 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || |||||||||||| || ||||| | | | |||| || Sbjct 10683406 ACCAAATGAAGAGTTGACTCTTTTTGAATGTTGTAATCAGAAAGTGTTCTTCCATCCTCA 10683347 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||| ||||| ||||| || || | ||| || || |||| | ||||| |||||| | Sbjct 10683346 AGTTGCTTTCCGGCAAAAATTAATCTTTGTTGATCTGGAGGGATTCCTTCCTTATCTTGA 10683287 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| |||||| || ||| ||| || | || || || || | ||||| |||||| Sbjct 10683286 ATCTTTGATTTGACATTATCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTTA 10683227 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| ||||| ||||| || ||||| Sbjct 10683226 CCTGTTAAGGTCTTAACAAAAATCTGCAT 10683198 Score = 102 bits (112), Expect = 6e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGTCCAATTGTTTTCCTGCAA 43988 |||||||||||| || ||||| || | | | |||| || | ||||||||| |||| Sbjct 10682021 CTCTTTTTGAATGTTGTAATC-AGAAAGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAA 10681963 Query 43989 ATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCA 44048 | || || | ||| ||||| |||| | ||||| |||||| ||||||| |||||| Sbjct 10681962 AAATTAATCTTTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAATTTTTGATTTGACGT 10681903 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 | | | ||| || | || || || || | ||||| |||||||| ||||| ||||| | Sbjct 10681902 TGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATAGTTTTACCTGTTAAGGTCTTAA 10681843 Query 44109 CAAATATTTGCAT 44121 |||| || ||||| Sbjct 10681842 CAAAAATCTGCAT 10681830 Score = 95.1 bits (104), Expect = 9e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||||||||| ||||| ||||| | ||| || || | || | ||||| | Sbjct 10682214 CATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCT 10682155 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| ||||||| |||||| | ||| || || | || || || || | |||| Sbjct 10682154 TATCTTGAATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAA 10682095 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || ||||||||||| ||||| |||||||| Sbjct 10682094 TAGTCTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354777016279980