Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq2 100 2e-16
>seq2
Length=16759152
Score = 100 bits (110), Expect = 2e-16
Identities = 164/234 (70%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|||||||| || || ||||| ||||| || || || || | |||| | ||||||
Sbjct 10681810 ACCAAATGGAGAGTTGATTCCTTTTGGATATTATAGTCAGAAAGAGTTCTTCCATCTTCA 10681751
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
| |||||| || ||| |||| | ||||||||||| || | ||||||||||| |
Sbjct 10681750 AGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGA 10681691
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
|| ||| || || | | ||| || ||| ||| || || | || || ||||||
Sbjct 10681690 ATCTTTGACTTGACATTGTCAATAGTGTCGGAAGGCTCTACCTCAAGAGTGATAGTTTTG 10681631
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAACTCTTATAAATG-ACAAA 20232
|| ||||| || || || ||||||||||| ||||| | ||| |||| |||||
Sbjct 10681630 CCTGTCAAAGTCTTAACGAAAATTTGCATGGTTAAAGT-TTAGTAATGTACAAA 10681578
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|||||||| || |||||||||||||| || ||||| || | |||| | ||||||
Sbjct 10682266 ACCAAATGAAGAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGAGTTCTTCCATCTTCA 10682207
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
| |||||| || ||| | || | || |||||||| || | ||||| || || |
Sbjct 10682206 AGTTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGAATTCCTTCCTTATCTTGA 10682147
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
|||||| ||| || | | ||| | ||| ||||| ||| | ||||| || ||
Sbjct 10682146 ATTTTTGATTTGACATTGTCAATGGTGTCGGATGGTTCTACTTCAAGAGTAATAGTCTTT 10682087
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| || || || |||||||||||||||||
Sbjct 10682086 CCTGTTAAAGTCTTGACAAAAATTTGCAT 10682058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419586509647935
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |