Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq2 248 7e-61
>seq2
Length=16759152
Score = 248 bits (274), Expect = 7e-61
Identities = 502/738 (68%), Gaps = 8/738 (1%)
Strand=Plus/Minus
Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904
||||||||| | ||| |||||||| |||| |||| ||||| || |||||||||||
Sbjct 14764754 GACATAACACCGAATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCC 14764695
Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964
|| | |||||||| |||||||||| || || || || |||| || | |||| ||
Sbjct 14764694 TCAATTGAAATATTAACCATAAAATCAAAGGGGTTCTT--AACATTATAAAGTTTTGAAC 14764637
Query 12965 CCTAA--TTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTT-CATTAAATCA 13021
| | ||| | ||||| |||||| ||| | || || || ||| |||||||
Sbjct 14764636 AATTAAGTTCCACCAACAAATGGTCAGCTACATATTCAATATA-TGTACACATTAAACGT 14764578
Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081
|||||||||| || | | ||||| | ||| ||||| | | | ||||| ||||||
Sbjct 14764577 GAGTTCATTCCAATCATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCA 14764518
Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTC-TCTAATGGAGGATTTGATAGATGCTT 13140
||||| | ||| || ||| ||| ||||||| || |||| ||| || | |
Sbjct 14764517 ACTGCATTTTTAATAATTTCTTTTA-TACGTTCTTCAGATGGTTTGTTTTCAAGGTAACT 14764459
Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200
|||||| | || || ||||||| ||| ||||| |||||||| || | || || ||
Sbjct 14764458 AAACATAAGGCAGGCGAAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGA 14764399
Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260
| ||| | || ||||| | || ||||| || | ||||||||| | |||||| |||||
Sbjct 14764398 ATGTGTCAATCCTGGCATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACC 14764339
Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT 13320
||||| || || |||||||| |||||||| || || | | ||| ||| | ||| |||
Sbjct 14764338 AGAAAAGAAGATACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATT 14764279
Query 13321 TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTC 13380
||| | ||||| || ||||| | ||||||| | | | | | | ||
Sbjct 14764278 CTTATCAGCGATCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATC 14764219
Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440
|| || ||||| | | || |||| | | |||| ||||| || || || | |
Sbjct 14764218 TAAAGCATTAAAAAGTTTCATTCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTT 14764159
Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500
|||||| || |||||||||||||| || |||||||||||||| || | | ||
Sbjct 14764158 TGAATACATCTCACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGC 14764099
Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560
||| | | |||||||| ||||||| || | || || || ||||| || || ||
Sbjct 14764098 CTCGGGAATTTGAACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATC 14764039
Query 13561 ACTAGCAGCaaaaaaaGC 13578
| ||| ||||| |||||
Sbjct 14764038 AGAAGCGGCAAAGAAAGC 14764021
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430981690899270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |