Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 248 7e-61 >seq2 Length=16759152 Score = 248 bits (274), Expect = 7e-61 Identities = 502/738 (68%), Gaps = 8/738 (1%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||| | ||| |||||||| |||| |||| ||||| || ||||||||||| Sbjct 14764754 GACATAACACCGAATTTCTGATATTCAGAAACTTTTTTCTCAAAGAAATTTGTTTTTCCC 14764695 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964 || | |||||||| |||||||||| || || || || |||| || | |||| || Sbjct 14764694 TCAATTGAAATATTAACCATAAAATCAAAGGGGTTCTT--AACATTATAAAGTTTTGAAC 14764637 Query 12965 CCTAA--TTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTT-CATTAAATCA 13021 | | ||| | ||||| |||||| ||| | || || || ||| ||||||| Sbjct 14764636 AATTAAGTTCCACCAACAAATGGTCAGCTACATATTCAATATA-TGTACACATTAAACGT 14764578 Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081 |||||||||| || | | ||||| | ||| ||||| | | | ||||| |||||| Sbjct 14764577 GAGTTCATTCCAATCATATCAACAGGAAGAGCATCTGTAAGGTATTCCTTTTCAATATCA 14764518 Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTC-TCTAATGGAGGATTTGATAGATGCTT 13140 ||||| | ||| || ||| ||| ||||||| || |||| ||| || | | Sbjct 14764517 ACTGCATTTTTAATAATTTCTTTTA-TACGTTCTTCAGATGGTTTGTTTTCAAGGTAACT 14764459 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 |||||| | || || ||||||| ||| ||||| |||||||| || | || || || Sbjct 14764458 AAACATAAGGCAGGCGAAATCACGGTGTAATCCCTCATCTCTTGAAATCAATTCATTGGA 14764399 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260 | ||| | || ||||| | || ||||| || | ||||||||| | |||||| ||||| Sbjct 14764398 ATGTGTCAATCCTGGCATCAAACCACGTTTCTTCAGCCAAAATATGGAAGCAAATGAACC 14764339 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT 13320 ||||| || || |||||||| |||||||| || || | | ||| ||| | ||| ||| Sbjct 14764338 AGAAAAGAAGATACCTTCAACAGCTGCAAAAGCAATAACTCGTTCTCCAAAAGTAGCATT 14764279 Query 13321 TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTC 13380 ||| | ||||| || ||||| | ||||||| | | | | | | || Sbjct 14764278 CTTATCAGCGATCCATCTTAAAGCCCAATCAGCTTTTTTTCTGATAAATGGAAACTCATC 14764219 Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440 || || ||||| | | || |||| | | |||| ||||| || || || | | Sbjct 14764218 TAAAGCATTAAAAAGTTTCATTCTTTCGTCATTGTCACGTATATAGGTTTCGATAAGTTT 14764159 Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 |||||| || |||||||||||||| || |||||||||||||| || | | || Sbjct 14764158 TGAATACATCTCACTGTGAATATTTTCCATGGCAATTTGGAAACCATAGAAGAAACGTGC 14764099 Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 ||| | | |||||||| ||||||| || | || || || ||||| || || || Sbjct 14764098 CTCGGGAATTTGAACTTCTTTAGAAAATCTCTCGACCAAATTCTCATTAACAATACCATC 14764039 Query 13561 ACTAGCAGCaaaaaaaGC 13578 | ||| ||||| ||||| Sbjct 14764038 AGAAGCGGCAAAGAAAGC 14764021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430981690899270